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vegsoup log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2022-09-29-10-51/RF_PKG_CHECK/PKGS/vegsoup.Rcheck'
* using R version 4.2.1 Patched (2022-09-26 r82921 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--as-cran'
* checking for file 'vegsoup/DESCRIPTION' ... OK
* this is package 'vegsoup' version '0.2-9'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Roland Kaiser'

New submission

Found the following (possibly) invalid URLs:
  URL: http://wiki.openstreetmap.org/wiki/Slippy_map_tilenames (moved to https://wiki.openstreetmap.org/wiki/Slippy_map_tilenames)
    From: man/googletiles.Rd
    Status: 200
    Message: OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'vegsoup' can be installed ... [54s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... NOTE
unable to verify current time
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Maintainer field differs from that derived from Authors@R
  Maintainer: 'Roland Kaiser'
  Authors@R:  'Roland Kaiser '

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [53s] NOTE
Found if() conditions comparing class() to string:
File 'vegsoup/R/Latex.R': if (class(obj) != "VegsoupPartitionFidelity") ...
File 'vegsoup/R/Sites-methods.R': if (class(r) == "try-error") ...
File 'vegsoup/R/Species-methods.R': if (class(r) == "try-error") ...
File 'vegsoup/R/Taxonomy-methods.R': if (class(r) == "try-error") ...
File 'vegsoup/R/Vegsoup-Internal.R': if (class(dist) != "dist") ...
File 'vegsoup/R/Vegsoup.R': if (missing(z) & class(x) != "SpeciesTaxonomy") ...
File 'vegsoup/R/Vegsoup.R': if (class(x) != "Species" & class(x) != "SpeciesTaxonomy") ...
File 'vegsoup/R/Vegsoup.R': if (class(y) != "Sites") ...
File 'vegsoup/R/Vegsoup.R': if (class(z) != "Taxonomy") ...
File 'vegsoup/R/Vegsoup.R': if (missing(z) & class(x) == "SpeciesTaxonomy") ...
File 'vegsoup/R/Vegsoup.R': if (class(z) != "Taxonomy" & class(z) != "SpeciesTaxonomy") ...
File 'vegsoup/R/Vegsoup.R': if (!identical(x, z) & class(x) != "SpeciesTaxonomy") ...
File 'vegsoup/R/Vegsoup.R': if (class(x) == "SpeciesTaxonomy") ...
File 'vegsoup/R/VegsoupPartition-VisualisationMethods.R': if (class(cents) != "try-error") ...
File 'vegsoup/R/ellipsoidhull.R': if (class(x) == "ellipsoid") ...
File 'vegsoup/R/stack.species.R': if (class(test) == "factor" | class(test) == "character") ...
File 'vegsoup/R/stack.species.R': if (class(test) == "numeric" | class(test) == "integer") ...
File 'vegsoup/R/stack.species.R': if (class(test) == "integer" & dim(table(test)) == 2) ...
File 'vegsoup/R/stack.species.R': if (class(test) == "numeric" & dim(table(test)) > 2) ...
File 'vegsoup/R/stack.species.R': if (class(test) == "integer" & dim(table(test)) > 2) ...
File 'vegsoup/R/stack.species.R': if (class(r) == "try-error") ...
File 'vegsoup/R/write.verbatim.R': if (class(obj) != "Vegsoup" & class(obj) != "VegsoupPartition") ...
File 'vegsoup/R/write.verbatim.R': if (class(obj) == "VegsoupPartition") ...
File 'vegsoup/R/write.verbatim.R': if (missing(rule) & class(obj) != "VegsoupPartition") ...
File 'vegsoup/R/write.verbatim.R': if (class(obj) == "Vegsoup") ...
File 'vegsoup/R/write.verbatim.R': if (class(obj) == "VegsoupPartition" & missing(rule)) ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'dave'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [84s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
optimize 7.88   0.04    7.94
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'base.R' [13s]
  Running 'plot.R'
  Running 'profile.R'
  Running 'stable.R' [12s]
  Running 'vegdata.R'
 [34s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* skipping checking HTML version of manual: no command 'tidy' found
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 6 NOTEs
See
  'R:/run/building/build_2022-09-29-10-51/RF_PKG_CHECK/PKGS/vegsoup.Rcheck/00check.log'
for details.


Run time: 409.11 seconds.