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EMLasso log file (check_x86_64_linux)

Sun Jun 16 16:15:16 2013: Checking package EMLasso (SVN revision 220) ...
* using log directory ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck’
* using R version 3.0.1 Patched (2013-06-04 r62868)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘EMLasso/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EMLasso’ version ‘2.0.9’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Nick Sabbe ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EMLasso’ can be installed ... [9s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck/00_pkg_src/EMLasso/man/fit.glmnet.Rd’:
  \examples lines wider than 105 characters:
     cv.lnet<-fit.glmnet(iris, y, lambda=0.05, weights=runif(nrow(iris)), verbosity=1, type.measure="auc")

Rd file ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck/00_pkg_src/EMLasso/man/fit.lognet.Rd’:
  \examples lines wider than 105 characters:
     cv.lnet<-fit.lognet(iris, y, lambda=0.05, weights=runif(nrow(iris)), verbosity=1, type.measure="auc")

Rd file ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck/00_pkg_src/EMLasso/man/lognetProbabilityReusable.Rd’:
  \examples lines wider than 105 characters:
             lognetProbabilityReusable(lnet, iris.nd2, imputeDs2FitDsProperties=iris.cp2, usecol=5, verbosity=1)

Rd file ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck/00_pkg_src/EMLasso/man/predictProb.Rd’:
  \examples lines wider than 105 characters:
             lpw<-lognetProbabilityReusable(lnet, imputeDs2FitDsProperties=iris.cp2, iris.nd2, usecol=5, verbosity=1)

Rd file ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck/00_pkg_src/EMLasso/man/thresHolding.Rd’:
  \examples lines wider than 105 characters:
     thresHolding(iris.cv.emlognet, coefsUsed=list(onlySepL=c("Sepal.Length"), onlySpecies=c("Speciesversicolor", "Speciesvirginica")), reps ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [80s/80s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2013-06-16-16-09/RF_PKG_CHECK/PKGS/EMLasso.Rcheck/00check.log’
for details.

Run time: 188.85 seconds.