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hypergsplines log file (check_x86_64_linux)

Thu Nov 21 20:30:19 2013: Checking package hypergsplines (SVN revision 21) ...
* using log directory ‘/mnt/building/build_2013-11-21-20-07/RF_PKG_CHECK/PKGS/hypergsplines.Rcheck’
* using R version 3.0.2 Patched (2013-11-20 r64277)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘hypergsplines/DESCRIPTION’ ... OK
* this is package ‘hypergsplines’ version ‘0.0-40’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Daniel Sabanes Bove ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hypergsplines’ can be installed ... [204s/322s] OK
* checking installed package size ... NOTE
  installed size is  9.0Mb
  sub-directories of 1Mb or more:
    libs   8.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file found at top level:
  ‘examples’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘Rcpp’ ‘RcppArmadillo’
  These packages need to be imported from for the case when
  this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in ‘inst/doc’:
  ‘examples.Rnw’
A ‘vignettes’ directory will be required as from R 3.1.0
* checking examples ... [28s/57s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
survModelData 6.676  0.160  10.705
stochSearch   4.641  0.080   7.491
getBmaSamples 4.076  0.016   8.390
getFitSamples 3.572  0.016  10.621
glmGetSamples 2.292  0.020   6.940
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘examples.Rnw’ using ‘UTF-8’ ... [89s/125s] OK
 [89s/125s] OK
* checking re-building of vignette outputs ... [89s/134s] OK
* checking PDF version of manual ... OK

NOTE: There were 5 notes.
See
  ‘/mnt/building/build_2013-11-21-20-07/RF_PKG_CHECK/PKGS/hypergsplines.Rcheck/00check.log’
for details.

Run time: 728.94 seconds.