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IPMpack log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2015-01-29-20-23/RF_PKG_CHECK/PKGS/IPMpack.Rcheck'
* using R version 3.1.2 Patched (2015-01-27 r67637)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'IPMpack/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IPMpack' version '2.1'
* checking CRAN incoming feasibility ... WARNING
Maintainer: 'Sean McMahon '
Insufficient package version (submitted: 2.1, existing: 2.1)
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IPMpack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'IPMpack.Rproj' 'TODO.txt'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getListRegObjects: no visible global function definition for 'rmvnorm'
.getListRegObjectsFec: no visible global function definition for
  'rmvnorm'
diagnosticsPmatrix: no visible global function definition for
  'dtruncnorm'
sampleVitalRateObj: no visible global function definition for
  'rdirichlet'
sampleVitalRateObj: no visible global function definition for 'rmvnorm'
simulateCarlina: no visible global function definition for 'rmvnorm'
growth,numeric-numeric-data.frame-growthObjTruncIncr: no visible global
  function definition for 'dtruncnorm'
growthCum,numeric-numeric-data.frame-growthObjTruncIncr: no visible
  global function definition for 'ptruncnorm'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ...Warning: running command '"R:\base\qpdf\QPDF-2~1.1\bin\qpdf.exe" --stream-data=compress --object-streams=generate R:\tmp\RtmpQruTSz\pdf6d05fb01e2f/IPMpack_Vignette.pdf R:\tmp\RtmpQruTSz\pdf6d069f477c4' had status 2
Warning: running command '"R:\base\gs\gs9.10\bin\gswin64c.exe" -q -dNOPAUSE -dBATCH -sDEVICE=pdfwrite -dPDFSETTINGS=/ebook -dCompatibilityLevel=1.5 -dAutoRotatePages=/None -sOutputFile=R:\tmp\RtmpQruTSz\pdf6d04d561f4 R:\tmp\RtmpQruTSz\pdf6d05fb01e2f/IPMpack_Vignette.pdf' had status 1
 OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following files are already in R: 'Rd.sty', 'Sweave.sty'
Please remove them from your package.
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'IPMpack_Vignette.Rnw' using 'UTF-8' ... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There were 4 notes.
See
  'R:/run/building/build_2015-01-29-20-23/RF_PKG_CHECK/PKGS/IPMpack.Rcheck/00check.log'
for details.

Run time: 149.58 seconds.