R Development Page
Contributed R Packages
Below is a list of all packages provided by project NWFSC assessment code.
Important note for package
binaries: R-Forge provides these binaries only for
the most recent version of R, but not for older
versions. In order to successfully install the
packages provided on R-Forge, you have to switch
to the most recent version of R or, alternatively,
install from the package sources (.tar.gz).
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nwfscAgeingError | Ageing error
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This package uses double read data to estimate ageing imprecision and bias from fishery otoliths |
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Version: 1.0 |
Last change: 2014-01-22 22:52:38+01 |
Rev.: 230 |
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Download:
 (.tar.gz) |
 (.zip) |
Build status: Current |
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R install command:
install.packages("nwfscAgeingError", repos="http://R-Forge.R-project.org") |
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nwfscDeltaGLM | Bayesian delta-GLM package for constructing indices of CPUE data
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The nwfscDeltaGLM package provides a Bayesian framework for constructing CPUE indices out of stratified survey (or commercial) fisheries landings data. The model can also be applied to similarly stratified bycatch data. The model is very flexible, optionally allowing the incorporation of strata, year, and vessel effects, strata x year and vessel x year interactions, and fixed covariates. Several parameterization for including offsets (effort) are also included. Each of these can be included in the presence-absence (occupancy) model or the positive component of the delta-GLM model. |
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Version: 1.0 |
Last change: 2014-08-11 07:17:29+02 |
Rev.: 259 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("nwfscDeltaGLM", repos="http://R-Forge.R-project.org") |
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nwfscMapping | Mapping functions for NWFSC
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Some NWFSC centric mapping functions for R |
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Version: 1.0 |
Last change: 2014-06-18 21:49:54+02 |
Rev.: 256 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("nwfscMapping", repos="http://R-Forge.R-project.org") |
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nwfscNLTS | Non-linear time series
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This package includes implementations of simplex and S-map algorithms for projecting time series data in the presence of non-linear (state-dependent) dynamics |
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Version: 1.0 |
Last change: 2013-06-19 01:48:42+02 |
Rev.: 101 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("nwfscNLTS", repos="http://R-Forge.R-project.org") |
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nwfscSurveyCode | What the package does (short line)
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More about what it does (maybe more than one line) |
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Version: 1.0 |
Last change: 2013-09-06 01:18:32+02 |
Rev.: 110 |
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Download:
(.tar.gz) |
(.zip) |
Build status: Current |
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R install command:
install.packages("nwfscSurveyCode", repos="http://R-Forge.R-project.org") |
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.
