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nlme2test log file (check_x86_64_linux)

Sat Jul  6 00:21:28 2013: Checking package nlme2test (SVN revision 116) ...
* using log directory ‘/mnt/building/build_2013-07-06-00-10/RF_PKG_CHECK/PKGS/nlme2test.Rcheck’
* using R version 3.0.1 Patched (2013-07-04 r63183)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘nlme2test/DESCRIPTION’ ... OK
* this is package ‘nlme2test’ version ‘0.31’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Andrzej Galecki ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nlme2test’ can be installed ... [7s/13s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘ACF’ ‘Dim’ ‘Initialize’ ‘LDEsysMat’ ‘Names’ ‘Names<-’ ‘VarCorr’
  ‘Variogram’ ‘allCoef’ ‘anova.lme’ ‘asOneFormula’ ‘asTable’ ‘augPred’
  ‘balancedGrouped’ ‘coef<-’ ‘coefficients<-’ ‘collapse’ ‘compareFits’
  ‘comparePred’ ‘corAR1’ ‘corARMA’ ‘corCAR1’ ‘corCompSymm’ ‘corExp’
  ‘corFactor’ ‘corGaus’ ‘corIdent’ ‘corLin’ ‘corMatrix’ ‘corNatural’
  ‘corRatio’ ‘corSpatial’ ‘corSpher’ ‘corSymm’ ‘covariate<-’ ‘fdHess’
  ‘fixed.effects’ ‘fixef’ ‘gapply’ ‘getCovariate’ ‘getCovariateFormula’
  ‘getData’ ‘getGroups’ ‘getGroupsFormula’ ‘getResponse’
  ‘getResponseFormula’ ‘getVarCov’ ‘gls’ ‘glsControl’ ‘glsStruct’
  ‘gnls’ ‘gnlsControl’ ‘gnlsStruct’ ‘groupedData’ ‘gsummary’
  ‘intervals’ ‘isBalanced’ ‘isInitialized’ ‘lmList’ ‘lmList.formula’
  ‘lme’ ‘lme.formula’ ‘lme.lmList’ ‘lmeControl’ ‘lmeScale’ ‘lmeStruct’
  ‘logDet’ ‘matrix<-’ ‘needUpdate’ ‘nfGroupedData’ ‘nlme’
  ‘nlme.formula’ ‘nlme.nlsList’ ‘nlmeControl’ ‘nlmeStruct’ ‘nlsList’
  ‘nlsList.formula’ ‘nmGroupedData’ ‘pdBlocked’ ‘pdCompSymm’
  ‘pdConstruct’ ‘pdDiag’ ‘pdFactor’ ‘pdIdent’ ‘pdKroneckeR’ ‘pdLogChol’
  ‘pdMat’ ‘pdMatrix’ ‘pdNatural’ ‘pdSymm’ ‘phenoModel’ ‘plot.lme’
  ‘pooledSD’ ‘quinModel’ ‘random.effects’ ‘ranef’ ‘reStruct’ ‘recalc’
  ‘simulate.lme’ ‘splitFormula’ ‘varComb’ ‘varConstPower’ ‘varExp’
  ‘varFixed’ ‘varFunc’ ‘varIdent’ ‘varPower’ ‘varWeights’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/mnt/building/build_2013-07-06-00-10/RF_PKG_CHECK/PKGS/nlme2test.Rcheck/00check.log’
for details.

Run time: 197.2 seconds.