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cthmm log file (build_win64)

Wed Jul 23 05:30:13 2014: Building binary for package cthmm (SVN revision 24)
using R version 3.1.1 Patched (2014-07-20 r66218) ...

* installing to library 'R:/lib/local/3.1'
* installing *source* package 'cthmm' ...
** libs

*** arch - i386
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c auxmat_cpp.cpp -o auxmat_cpp.o
auxmat_cpp.cpp: In function 'arma::cx_cube auxmat2_cpp(arma::cx_colvec, double)':
auxmat_cpp.cpp:26:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c dur_loop.cpp -o dur_loop.o
dur_loop.cpp: In function 'SEXPREC* dur_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
dur_loop.cpp:131:6: warning: unused variable 'test' [-Wunused-variable]
dur_loop.cpp:138:6: warning: unused variable 'num_subjects' [-Wunused-variable]
dur_loop.cpp: In function 'arma::mat exact_dur(std::vector >, arma::mat, arma::ivec, int, int)':
dur_loop.cpp:176:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
dur_loop.cpp:186:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
dur_loop.cpp: In function 'arma::mat exact_dur2(arma::cube, arma::mat, arma::ivec, int, int)':
dur_loop.cpp:206:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
dur_loop.cpp:216:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c eigen_decomp_cpp.cpp -o eigen_decomp_cpp.o
eigen_decomp_cpp.cpp: In function 'SEXPREC* eigen_decomp_list(SEXP)':
eigen_decomp_cpp.cpp:44:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_decomp_cpp.cpp:47:9: warning: statement is a reference, not call, to function 'exit' [-Waddress]
eigen_decomp_cpp.cpp:47:9: warning: statement has no effect [-Wunused-value]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c eigen_moments2.cpp -o eigen_moments2.o
eigen_moments2.cpp: In function 'arma::mat joint_transition_2moment(int, int, int, int, Rcpp::List, double)':
eigen_moments2.cpp:49:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
eigen_moments2.cpp: In function 'arma::mat joint_dur_dur_exact_time(int, int, double, arma::ivec, Rcpp::List)':
eigen_moments2.cpp:76:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:85:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:97:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:93:6: warning: unused variable 'in_either' [-Wunused-variable]
eigen_moments2.cpp: In function 'arma::mat joint_dur_trans_exact_time(int, int, int, arma::ivec, Rcpp::List, double)':
eigen_moments2.cpp:128:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:137:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:146:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:155:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'arma::mat joint_trans_trans_exact_time(int, int, int, int, arma::ivec, Rcpp::List, double)':
eigen_moments2.cpp:187:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:196:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:205:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:213:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:222:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'SEXPREC* joint_trans_trans_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
eigen_moments2.cpp:262:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'SEXPREC* joint_dur_dur_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
eigen_moments2.cpp:288:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'SEXPREC* joint_trans_dur_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
eigen_moments2.cpp:316:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c emission_init.cpp -o emission_init.o
emission_init.cpp: In function 'Rcpp::List get_emission_init_states(Rcpp::List, arma::icolvec, int, int)':
emission_init.cpp:76:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
emission_init.cpp: In function 'Rcpp::List get_emission_init_states_time_dep(Rcpp::List, arma::icolvec, int, int)':
emission_init.cpp:101:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c forwardback.cpp -o forwardback.o
forwardback.cpp: In function 'SEXPREC* forwardback(SEXP, SEXP, SEXP, SEXP)':
forwardback.cpp:19:7: warning: unused variable 'i' [-Wunused-variable]
forwardback.cpp: In function 'SEXPREC* forwardbacktimedep(SEXP, SEXP, SEXP, SEXP)':
forwardback.cpp:63:6: warning: unused variable 'i' [-Wunused-variable]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c get_mean.cpp -o get_mean.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c joint_mean_markov_jumps.cpp -o joint_mean_markov_jumps.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c joint_mean_markov_rewards.cpp -o joint_mean_markov_rewards.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c mat_exp_eigen.cpp -o mat_exp_eigen.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c multinom.cpp -o multinom.o
multinom.cpp: In function 'SEXPREC* multinom_hessian(SEXP, SEXP, SEXP, SEXP)':
multinom.cpp:19:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
multinom.cpp: In function 'arma::cube multinom_cov(arma::mat, arma::colvec)':
multinom.cpp:31:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c test_joint_means.cpp -o test_joint_means.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c trans_loop.cpp -o trans_loop.o
trans_loop.cpp: In function 'SEXPREC* trans_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
trans_loop.cpp:144:9: warning: unused variable 'test' [-Wunused-variable]
trans_loop.cpp:150:6: warning: unused variable 'num_subjects' [-Wunused-variable]
trans_loop.cpp: In function 'arma::mat exact_trans(std::vector >, Rcpp::List, double, arma::ivec, int, int, int)':
trans_loop.cpp:199:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:208:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:219:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp: In function 'arma::mat exact_trans2(arma::cube, Rcpp::List, double, arma::ivec, int, int, int)':
trans_loop.cpp:249:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:258:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:270:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c trans_probs_all.cpp -o trans_probs_all.o
g++ -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c uniformization.cpp -o uniformization.o
gfortran -m32     -O3  -mtune=core2 -c zgetri.f -o zgetri.o
gfortran -m32     -O3  -mtune=core2 -c ztrti2.f -o ztrti2.o
gfortran -m32     -O3  -mtune=core2 -c ztrtri.f -o ztrtri.o
g++ -m32 -shared -s -static-libgcc -o cthmm.dll tmp.def auxmat_cpp.o dur_loop.o eigen_decomp_cpp.o eigen_moments2.o emission_init.o forwardback.o get_mean.o joint_mean_markov_jumps.o joint_mean_markov_rewards.o mat_exp_eigen.o multinom.o test_joint_means.o trans_loop.o trans_probs_all.o uniformization.o zgetri.o ztrti2.o ztrtri.o -LR:/lib/R/R-patched/bin/i386 -lRlapack -LR:/lib/R/R-patched/bin/i386 -lRblas -lgfortran -LR:/base/local215/lib/i386 -LR:/base/local215/lib -lgfortran -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.1/cthmm/libs/i386

*** arch - x64
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c auxmat_cpp.cpp -o auxmat_cpp.o
auxmat_cpp.cpp: In function 'arma::cx_cube auxmat2_cpp(arma::cx_colvec, double)':
auxmat_cpp.cpp:26:31: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c dur_loop.cpp -o dur_loop.o
dur_loop.cpp: In function 'SEXPREC* dur_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
dur_loop.cpp:131:6: warning: unused variable 'test' [-Wunused-variable]
dur_loop.cpp:138:6: warning: unused variable 'num_subjects' [-Wunused-variable]
dur_loop.cpp: In function 'arma::mat exact_dur(std::vector >, arma::mat, arma::ivec, int, int)':
dur_loop.cpp:176:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
dur_loop.cpp:186:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
dur_loop.cpp: In function 'arma::mat exact_dur2(arma::cube, arma::mat, arma::ivec, int, int)':
dur_loop.cpp:206:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
dur_loop.cpp:216:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c eigen_decomp_cpp.cpp -o eigen_decomp_cpp.o
eigen_decomp_cpp.cpp: In function 'SEXPREC* eigen_decomp_list(SEXP)':
eigen_decomp_cpp.cpp:44:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_decomp_cpp.cpp:47:9: warning: statement is a reference, not call, to function 'exit' [-Waddress]
eigen_decomp_cpp.cpp:47:9: warning: statement has no effect [-Wunused-value]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c eigen_moments2.cpp -o eigen_moments2.o
eigen_moments2.cpp: In function 'arma::mat joint_transition_2moment(int, int, int, int, Rcpp::List, double)':
eigen_moments2.cpp:49:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
eigen_moments2.cpp: In function 'arma::mat joint_dur_dur_exact_time(int, int, double, arma::ivec, Rcpp::List)':
eigen_moments2.cpp:76:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:85:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:97:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:93:6: warning: unused variable 'in_either' [-Wunused-variable]
eigen_moments2.cpp: In function 'arma::mat joint_dur_trans_exact_time(int, int, int, arma::ivec, Rcpp::List, double)':
eigen_moments2.cpp:128:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:137:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:146:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:155:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'arma::mat joint_trans_trans_exact_time(int, int, int, int, arma::ivec, Rcpp::List, double)':
eigen_moments2.cpp:187:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:196:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:205:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:213:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp:222:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'SEXPREC* joint_trans_trans_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
eigen_moments2.cpp:262:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'SEXPREC* joint_dur_dur_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
eigen_moments2.cpp:288:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
eigen_moments2.cpp: In function 'SEXPREC* joint_trans_dur_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
eigen_moments2.cpp:316:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c emission_init.cpp -o emission_init.o
emission_init.cpp: In function 'Rcpp::List get_emission_init_states(Rcpp::List, arma::icolvec, int, int)':
emission_init.cpp:76:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
emission_init.cpp: In function 'Rcpp::List get_emission_init_states_time_dep(Rcpp::List, arma::icolvec, int, int)':
emission_init.cpp:101:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c forwardback.cpp -o forwardback.o
forwardback.cpp: In function 'SEXPREC* forwardback(SEXP, SEXP, SEXP, SEXP)':
forwardback.cpp:19:7: warning: unused variable 'i' [-Wunused-variable]
forwardback.cpp: In function 'SEXPREC* forwardbacktimedep(SEXP, SEXP, SEXP, SEXP)':
forwardback.cpp:63:6: warning: unused variable 'i' [-Wunused-variable]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c get_mean.cpp -o get_mean.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c joint_mean_markov_jumps.cpp -o joint_mean_markov_jumps.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c joint_mean_markov_rewards.cpp -o joint_mean_markov_rewards.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c mat_exp_eigen.cpp -o mat_exp_eigen.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c multinom.cpp -o multinom.o
multinom.cpp: In function 'SEXPREC* multinom_hessian(SEXP, SEXP, SEXP, SEXP)':
multinom.cpp:19:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
multinom.cpp: In function 'arma::cube multinom_cov(arma::mat, arma::colvec)':
multinom.cpp:31:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c test_joint_means.cpp -o test_joint_means.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c trans_loop.cpp -o trans_loop.o
trans_loop.cpp: In function 'SEXPREC* trans_times(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
trans_loop.cpp:144:9: warning: unused variable 'test' [-Wunused-variable]
trans_loop.cpp:150:6: warning: unused variable 'num_subjects' [-Wunused-variable]
trans_loop.cpp: In function 'arma::mat exact_trans(std::vector >, Rcpp::List, double, arma::ivec, int, int, int)':
trans_loop.cpp:199:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:208:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:219:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp: In function 'arma::mat exact_trans2(arma::cube, Rcpp::List, double, arma::ivec, int, int, int)':
trans_loop.cpp:249:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:258:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
trans_loop.cpp:270:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c trans_probs_all.cpp -o trans_probs_all.o
g++ -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG    -I"R:/lib/local/3.1/Rcpp/include" -I"R:/lib/local/3.1/RcppArmadillo/include" -I"R:/base/local215/include"     -O2 -Wall  -mtune=core2 -c uniformization.cpp -o uniformization.o
gfortran -m64     -O2  -mtune=core2 -c zgetri.f -o zgetri.o
gfortran -m64     -O2  -mtune=core2 -c ztrti2.f -o ztrti2.o
gfortran -m64     -O2  -mtune=core2 -c ztrtri.f -o ztrtri.o
g++ -m64 -shared -s -static-libgcc -o cthmm.dll tmp.def auxmat_cpp.o dur_loop.o eigen_decomp_cpp.o eigen_moments2.o emission_init.o forwardback.o get_mean.o joint_mean_markov_jumps.o joint_mean_markov_rewards.o mat_exp_eigen.o multinom.o test_joint_means.o trans_loop.o trans_probs_all.o uniformization.o zgetri.o ztrti2.o ztrtri.o -LR:/lib/R/R-patched/bin/x64 -lRlapack -LR:/lib/R/R-patched/bin/x64 -lRblas -lgfortran -LR:/base/local215/lib/x64 -LR:/base/local215/lib -lgfortran -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.1/cthmm/libs/x64
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'cthmm' as cthmm_1.0.zip
* DONE (cthmm)
Run time: 200.11 seconds.