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afex log file (check_x86_64_linux)

Thu Aug 18 13:42:25 2016: Checking package afex (SVN revision 180) ...
* using log directory ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/afex.Rcheck’
* using R version 3.3.1 Patched (2016-08-17 r71112)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘afex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘afex’ version ‘0.14-180’
* package encoding: latin1
* checking CRAN incoming feasibility ... WARNING
Maintainer: ‘Henrik Singmann ’

Insufficient package version (submitted: 0.14.180, existing: 0.16.1)

Found the following (possibly) invalid URLs:
  URL: doi:10.1080/13546783.2011.572718
    From: inst/doc/anova_posthoc_singmann_klauer_2011.html
    Message: Invalid URI scheme (use \doi for DOIs)

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘afex’ can be installed ... [7s/7s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
afex_options: no visible global function definition for ‘ls.str’
allFit: no visible global function definition for ‘setNames’
allFit: no visible global function definition for ‘update’
aov_4: no visible global function definition for ‘as.formula’
aov_car: no visible global function definition for ‘terms’
aov_car: no visible global function definition for ‘xtabs’
aov_car: no visible global function definition for ‘as.formula’
aov_car: no visible global function definition for ‘contrasts<-’
aov_car: no visible global function definition for ‘coef’
aov_ez: no visible global function definition for ‘as.formula’
check_likelihood: no visible global function definition for ‘logLik’
check_likelihood: no visible binding for global variable ‘logLik’
compare.2.vectors: no visible global function definition for ‘t.test’
compare.2.vectors: no visible global function definition for
  ‘wilcox.test’
compare.2.vectors: no visible global function definition for
  ‘as.formula’
mixed: no visible global function definition for ‘contrasts<-’
mixed: no visible global function definition for ‘as.formula’
mixed: no visible global function definition for ‘terms’
mixed: no visible global function definition for ‘model.matrix’
mixed: no visible global function definition for ‘model.frame’
mixed : check_likelihood: no visible global function definition for
  ‘logLik’
mixed : check_likelihood: no visible binding for global variable
  ‘logLik’
mixed: no visible global function definition for ‘anova’
mixed : getFvalue: no visible global function definition for ‘vcov’
nice.afex_aov: no visible global function definition for ‘anova’
Undefined global functions or variables:
  anova as.formula coef contrasts<- logLik ls.str model.frame
  model.matrix setNames t.test terms update vcov wilcox.test xtabs
Consider adding
  importFrom("stats", "anova", "as.formula", "coef", "contrasts<-",
             "logLik", "model.frame", "model.matrix", "setNames",
             "t.test", "terms", "update", "vcov", "wilcox.test", "xtabs")
  importFrom("utils", "ls.str")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
package ‘car’ exists but was not installed under R >= 2.10.0 so xrefs cannot be checked
Missing link or links in documentation object 'compare.2.vectors.Rd':
  ‘[coin]{Distribution}’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [6s/6s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/afex.Rcheck/00check.log’
for details.


Run time: 123.69 seconds.