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HTSDiff log file (check_x86_64_linux)

Sun Jan 18 23:26:54 2015: Checking package HTSDiff (SVN revision 98) ...
* using log directory ‘/mnt/building/build_2015-01-18-23-23/RF_PKG_CHECK/PKGS/HTSDiff.Rcheck’
* using R version 3.1.2 Patched (2015-01-12 r67453)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘HTSDiff/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTSDiff’ version ‘1.0.6’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Andrea Rau ’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HTSDiff’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘HTSDiff.Rnw’ ... [35s/36s] OK
 [35s/36s] OK
* checking re-building of vignette outputs ... [36s/37s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There were 2 notes.
See
  ‘/mnt/building/build_2015-01-18-23-23/RF_PKG_CHECK/PKGS/HTSDiff.Rcheck/00check.log’
for details.

Run time: 118.16 seconds.