R Development Page

HRTools log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2013-08-05-16-04/RF_PKG_CHECK/PKGS/HRTools.Rcheck'
* using R version 3.0.1 Patched (2013-08-02 r63479)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'HRTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HRTools' version '1.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Damiano G. Preatoni '
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HRTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
HRCruncher: no visible global function definition for 'error'
HRCruncher: no visible binding for global variable 'Freq'
* checking Rd files ... NOTE
prepare_Rd: squirrels.Rd:39-41: Dropping empty section \details
prepare_Rd: squirrels.Rd:42-44: Dropping empty section \source
prepare_Rd: squirrels.Rd:45-47: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'R:/run/building/build_2013-08-05-16-04/RF_PKG_CHECK/PKGS/HRTools.Rcheck/00_pkg_src/HRTools/man/HRCruncher.Rd':
  \examples lines wider than 100 characters:
     result <- HRCruncher(squirrels, method=c('mcp','hadj'), percent=95, grid=reference.grid, idfield=idfield, unin='m', unout='ha')

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Unknown package '' in Rd xrefs
Missing link or links in documentation object 'R:/run/building/build_2013-08-05-16-04/RF_PKG_CHECK/PKGS/HRTools.Rcheck/00_pkg_src/HRTools/man/HRCruncher.Rd':
  'HRData-class'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'bindAttrs' 'flattenShapefile' 'getArea' 'getHR' 'geth'
  'hasConverged'
Undocumented S4 classes:
  'HRData' 'HRDataGeom' 'HRDataGeomUD' 'HRDataGeometry'
  'HRDataGeometryUD' 'estUDm'
Undocumented S4 methods:
  generic 'bindAttrs' and siglist 'HRDataGeom'
  generic 'getArea' and siglist 'HRData'
  generic 'getArea' and siglist 'HRDataGeom'
  generic 'getHR' and siglist 'HRData'
  generic 'getHR' and siglist 'HRDataGeom'
  generic 'geth' and siglist 'HRData'
  generic 'geth' and siglist 'HRDataGeomUD'
  generic 'hasConverged' and siglist 'HRData'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
Warning: parse error in file 'HRTools-Ex.R':
34:11: unexpected symbol
33: 
34: calculate mcp
              ^
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in 'HRTools-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: HRCruncher
> ### Title: Batch home range calculations.
> ### Aliases: HRCruncher
> 
> ### ** Examples
> 
> data(squirrels)
> # size up a grid with 30 m cell size
> reference.grid <- sizeGrid(squirrels, res=30)
> 
> # plot reference grid and locations
> image(reference.grid, col='lightgray')
> plot(squirrels, col=seq(1:18), add=TRUE)
> 
> # define animal ID field
> idfield <- "TAG"
> 
> # define minumum number of fixes needed
> minfix <- 15
> 
> calculate mcp and hadj kernel (href and lscv kernels will be calculated implicitly)
Error: unexpected symbol in "calculate mcp"
Execution halted
Run time: 74.3 seconds.