R Development Page

jointseg log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2015-10-19-09-24/RF_PKG_CHECK/PKGS/jointseg.Rcheck'
* using R version 3.2.2 Patched (2015-10-16 r69529)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'jointseg/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'jointseg' version '0.7.0'
* checking CRAN incoming feasibility ...Warning: R:/run/building/build_2015-10-19-09-24/RF_PKG_CHECK/PKGS/jointseg.Rcheck/00_pkg_src/jointseg/man/jointSeg-package.Rd:6: unexpected '}'
Warning: R:/run/building/build_2015-10-19-09-24/RF_PKG_CHECK/PKGS/jointseg.Rcheck/00_pkg_src/jointseg/man/jointSeg-package.Rd:8: unexpected '}'
Warning: R:/run/building/build_2015-10-19-09-24/RF_PKG_CHECK/PKGS/jointseg.Rcheck/00_pkg_src/jointseg/man/jointSeg-package.Rd:18: unexpected '}'
Warning: /tmp/RtmpYmBjlv/Rbuild22f74aa8b65f/jointseg/man/jointSeg-package.Rd:17: All text must be in a section
Warning: /tmp/RtmpYmBjlv/Rbuild22f74aa8b65f/jointseg/man/jointSeg-package.Rd:17: All text must be in a section
 NOTE
Maintainer: 'Morgane Pierre-Jean '
New submission

Suggests or Enhances not in mainstream repositories:
  fpop

The Title field should be in title case, current version then in title case:
'Joint segmentation of multivariate (copy number) signals'
'Joint Segmentation of Multivariate (Copy Number) Signals'

The Description field should not start with the package name,
  'This package' or similar.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped

Package suggested but not available for checking: 'aroma.light'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'jointseg' can be installed ... WARNING
Found the following significant warnings:
  Warning: /tmp/RtmpYmBjlv/Rbuild22f74aa8b65f/jointseg/man/jointSeg-package.Rd:17: All text must be in a section
See 'R:/run/building/build_2015-10-19-09-24/RF_PKG_CHECK/PKGS/jointseg.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'PSCBS' 'cghseg'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: 'cghseg:::segmeanCO'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
PSSeg: warning in rank(data[, "c"], na = "keep"): partial argument
  match of 'na' to 'na.last'
PSSeg: warning in rank(data[, "d"], na = "keep"): partial argument
  match of 'na' to 'na.last'
* checking Rd files ... WARNING
prepare_Rd: jointSeg-package.Rd:6: unexpected '}'
prepare_Rd: jointSeg-package.Rd:8: unexpected '}'
prepare_Rd: jointSeg-package.Rd:18: unexpected '}'
prepare_Rd: jointSeg-package.Rd:17: All text must be in a section
prepare_Rd: jointSeg-package.Rd:17: Section \Sexpr is unrecognized and will be dropped
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'PSSeg.Rnw' using 'latin1' ... OK
   'dataGeneration.Rnw' using 'latin1' ... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 4 NOTEs
See
  'R:/run/building/build_2015-10-19-09-24/RF_PKG_CHECK/PKGS/jointseg.Rcheck/00check.log'
for details.


Run time: 85.49 seconds.