R Development Page

needleman.wunsch log file (00install.out)

* installing *source* package ‘needleman.wunsch’ ...
** libs
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nw.cpp -o nw.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nw_sat_quer.cpp -o nw_sat_quer.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nw_sg.cpp -o nw_sg.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nw_sg_mult.cpp -o nw_sg_mult.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nws.cpp -o nws.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nws_sat_quer.cpp -o nws_sat_quer.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nws_sg.cpp -o nws_sg.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c nws_sg_mult.cpp -o nws_sg_mult.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c qnw.cpp -o qnw.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c qnw_sat_quer.cpp -o qnw_sat_quer.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c qnw_sg.cpp -o qnw_sg.o
g++ -I/srv/R/R-patched/build.13-09-27/include -DNDEBUG  -I/usr/local/include -I"/home/rforge/lib/R/3.0/Rcpp/include"   -fpic  -g -O2  -c qnw_sg_mult.cpp -o qnw_sg_mult.o
g++ -shared -L/usr/local/lib -o needleman.wunsch.so nw.o nw_sat_quer.o nw_sg.o nw_sg_mult.o nws.o nws_sat_quer.o nws_sg.o nws_sg_mult.o qnw.o qnw_sat_quer.o qnw_sg.o qnw_sg_mult.o -L/home/rforge/lib/R/3.0/Rcpp/lib -lRcpp -Wl,-rpath,/home/rforge/lib/R/3.0/Rcpp/lib -L/srv/R/R-patched/build.13-09-27/lib -lR
installing to /mnt/building/build_2013-09-27-16-04/RF_PKG_CHECK/PKGS/needleman.wunsch.Rcheck/needleman.wunsch/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (needleman.wunsch)