R Development Page
CALIBERdrugdose log file (check_x86_64_windows)
* using log directory 'R:/run/building/build_2021-03-17-13-06/RF_PKG_CHECK/PKGS/CALIBERdrugdose.Rcheck'
* using R version 4.0.4 Patched (2021-03-05 r80087)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'CALIBERdrugdose/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CALIBERdrugdose' version '0.1-3'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Anoop Shah '
New submission
Found the following (possibly) invalid URLs:
URL: http://onlinelibrary.wiley.com/doi/10.1002/pds.1151/ (moved to https://onlinelibrary.wiley.com/doi/10.1002/pds.1151/)
From: man/CALIBERdoseconvert-package.Rd
man/addterm.Rd
man/as.drugdose_lookups.Rd
man/as.drugdose_multiwords.Rd
man/as.drugdose_patterns.Rd
man/as.drugdose_singlewords.Rd
man/doseconvert.Rd
man/export.Rd
man/interpret.Rd
man/lookups.Rd
man/multiwords.Rd
man/patterns.Rd
man/singlewords.Rd
man/testdoseconvert.Rd
man/testset.Rd
Status: 404
Message: Not Found
The Title field should be in title case. Current version is:
'Extract Drug Dose From Unstructured Dosage Text'
In title case that is:
'Extract Drug Dose from Unstructured Dosage Text'
The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'CALIBERdrugdose' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
addterm:
function(x, ...)
addterm.drugdose_singlewords:
function(x, words, replacement)
addterm:
function(x, ...)
addterm.drugdose_multiwords:
function(x, order, words, replacement, comment)
addterm:
function(x, ...)
addterm.drugdose_patterns:
function(x, order, words, qty, units, freq, tot, priority, max, time,
change, choice, doubledose, duration, category, comment)
addterm:
function(x, ...)
addterm.drugdose_lookups:
function(x, textid, text, qty, units, freq, tot, max, time, change,
choice, duration, daily_dose)
export:
function(x, ...)
export.drugdose_singlewords:
function(x, filename)
export:
function(x, ...)
export.drugdose_multiwords:
function(x, filename)
export:
function(x, ...)
export.drugdose_patterns:
function(x, filename)
export:
function(x, ...)
export.drugdose_lookups:
function(x, filename)
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addterm.drugdose_lookups: no visible binding for global variable
'words'
as.drugdose_lookups: no visible binding for global variable 'qty'
as.drugdose_lookups: no visible binding for global variable 'freq'
as.drugdose_lookups: no visible binding for global variable 'tot'
as.drugdose_lookups: no visible binding for global variable 'time'
as.drugdose_lookups: no visible binding for global variable 'duration'
as.drugdose_lookups: no visible binding for global variable
'daily_dose'
as.drugdose_lookups: no visible binding for global variable 'text'
calculate_mg: no visible binding for global variable 'daily_mg'
calculate_mg: no visible binding for global variable 'daily_dose'
doseconvert: no visible binding for global variable 'originalorder'
doseconvert: no visible binding for global variable 'doseid'
doseconvert: no visible binding for global variable 'dosestrings'
doseconvert : analysis: no visible global function definition for '.'
doseconvert : analysis: no visible binding for global variable 'qty'
doseconvert : analysis: no visible binding for global variable 'freq'
doseconvert : analysis: no visible binding for global variable 'tot'
doseconvert : analysis: no visible binding for global variable 'time'
doseconvert : analysis: no visible binding for global variable 'change'
doseconvert : analysis: no visible binding for global variable 'choice'
doseconvert : analysis: no visible binding for global variable
'duration'
doseconvert : analysis: no visible binding for global variable
'daily_dose'
doseconvert: no visible global function definition for 'mclapply'
doseconvert : : no visible binding for global variable
'doseid'
doseconvert: no visible binding for global variable 'i.textid'
testdoseconvert: no visible binding for global variable 'outcome'
testdoseconvert: no visible binding for global variable 'qty'
testdoseconvert: no visible binding for global variable 'freq'
testdoseconvert: no visible binding for global variable 'tot'
testdoseconvert: no visible binding for global variable 'time'
testdoseconvert: no visible binding for global variable 'change'
testdoseconvert: no visible binding for global variable 'choice'
testdoseconvert: no visible binding for global variable 'duration'
testdoseconvert: no visible binding for global variable 'daily_dose'
Undefined global functions or variables:
. change choice daily_dose daily_mg doseid dosestrings duration freq
i.textid mclapply originalorder outcome qty text time tot words
Consider adding
importFrom("graphics", "text")
importFrom("stats", "time")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'R:/run/building/build_2021-03-17-13-06/RF_PKG_CHECK/PKGS/CALIBERdrugdose.Rcheck/00check.log'
for details.
Run time: 68.86 seconds.