R Development Page

HDR log file (check_x86_64_linux)

Wed Sep 25 16:18:44 2013: Checking package HDR (SVN revision 6) ...
* using log directory ‘/mnt/building/build_2013-09-25-16-08/RF_PKG_CHECK/PKGS/HDR.Rcheck’
* using R version 3.0.2 RC (2013-09-24 r63985)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘HDR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HDR’ version ‘1.0’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘HDR, ’
New submission
Non-FOSS package license (?)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HDR’ can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  ?
Standardizable: FALSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found an obsolete/platform-specific call in the following function:
  ‘IdentifyNoise’
Found the platform-specific device:
  ‘x11’
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
* checking Rd files ... NOTE
prepare_Rd: HDR-package.Rd:34-36: Dropping empty section \examples
prepare_Rd: IdentifyNoise.Rd:40-42: Dropping empty section \seealso
prepare_Rd: SpecSum.Rd:37-39: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file ‘/mnt/building/build_2013-09-25-16-08/RF_PKG_CHECK/PKGS/HDR.Rcheck/00_pkg_src/HDR/man/IdentifyNoise.Rd’:
  \examples lines wider than 100 characters:
             th <- as.numeric(unlist(strsplit(readline("Enter wavelength ranges to be removed, seperated by a comma: "), 

Rd file ‘/mnt/building/build_2013-09-25-16-08/RF_PKG_CHECK/PKGS/HDR.Rcheck/00_pkg_src/HDR/man/SampleHySpecRefl.Rd’:
  \examples lines wider than 100 characters:
     plot(as.numeric(substring(colnames(SampleHySpecRefl), 2)), apply(SampleHySpecRefl, 2, mean), ylim= c(0, 1), type= "l", xlab= "wavelengt ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Unknown package ‘’ in Rd xrefs
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘naInd’ ‘x’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/2s] OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings.
NOTE: There were 4 notes.
See
  ‘/mnt/building/build_2013-09-25-16-08/RF_PKG_CHECK/PKGS/HDR.Rcheck/00check.log’
for details.

Run time: 102 seconds.