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CandidateBacon log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2014-03-14-16-11/RF_PKG_CHECK/PKGS/CandidateBacon.Rcheck'
* using R version 3.0.3 Patched (2014-03-06 r65159)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'CandidateBacon/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CandidateBacon' version '1.0'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Ronald Nelson '
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CandidateBacon' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CandidateBacon-package.Rd:29-30: Dropping empty section \seealso
prepare_Rd: degree_of_separation.Rd:34-36: Dropping empty section \note
prepare_Rd: degree_of_separation.Rd:31-33: Dropping empty section \author
prepare_Rd: degree_of_separation.Rd:28-30: Dropping empty section \references
prepare_Rd: draw_network.Rd:40-42: Dropping empty section \note
prepare_Rd: draw_network.Rd:37-39: Dropping empty section \author
prepare_Rd: draw_network.Rd:34-36: Dropping empty section \references
prepare_Rd: find_path.Rd:41-43: Dropping empty section \note
prepare_Rd: find_path.Rd:38-40: Dropping empty section \author
prepare_Rd: find_path.Rd:35-37: Dropping empty section \references
prepare_Rd: import_network.Rd:34-36: Dropping empty section \note
prepare_Rd: import_network.Rd:31-33: Dropping empty section \author
prepare_Rd: import_network.Rd:28-30: Dropping empty section \references
prepare_Rd: import_network.Rd:40-42: Dropping empty section \seealso
prepare_Rd: multi_gene_paths.Rd:34-36: Dropping empty section \note
prepare_Rd: multi_gene_paths.Rd:31-33: Dropping empty section \author
prepare_Rd: multi_gene_paths.Rd:28-30: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'R:/run/building/build_2014-03-14-16-11/RF_PKG_CHECK/PKGS/CandidateBacon.Rcheck/00_pkg_src/CandidateBacon/man/CandidateBacon-package.Rd':
  \examples lines wider than 100 characters:
     candidate_gene_matrix <- as.data.frame(matrix(data = c("a", "c", "c", "d", "e", "h", "j", "f", "k", "i", "x", "i"), 

Rd file 'R:/run/building/build_2014-03-14-16-11/RF_PKG_CHECK/PKGS/CandidateBacon.Rcheck/00_pkg_src/CandidateBacon/man/multi_gene_paths.Rd':
  \examples lines wider than 100 characters:
     candidate_gene_matrix <- as.data.frame(matrix(data = c("a","c","c","d","e","h","j","f","k","i","x","i"), ncol=2, byrow=T), stringsAsFac ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  'example_network_Cyt'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  'R:/run/building/build_2014-03-14-16-11/RF_PKG_CHECK/PKGS/CandidateBacon.Rcheck/00check.log'
for details.

Run time: 23.48 seconds.

Additional Logs:   00install.out
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