R Development Page

CorReg log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2019-09-26-21-06/RF_PKG_CHECK/PKGS/CorReg.Rcheck'
* using R version 3.6.1 Patched (2019-09-06 r77160)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--as-cran'
* checking for file 'CorReg/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CorReg' version '1.2.14'
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Clement THERY '

New submission

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2019-07-20 as check problems were not
    corrected in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'CorReg' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    'Clement Thry [aut, cre], Christophe Biernacki [ctb], Gaetan Loridant [ctb], Florian Watrin [ctb], Quentin Grimonprez [ctb], Vincent Kubicki [ctb], Samuel Blanck [ctb], Jeremie Kellner [ctb]'
  Authors@R: 'Clment Thry [aut, cre], Christophe Biernacki [ctb], Gaetan Loridant [ctb], Florian Watrin [ctb], Quentin Grimonprez [ctb], Vincent Kubicki [ctb], Samuel Blanck [ctb], Jeremie Kellner [ctb]'

Maintainer field differs from that derived from Authors@R
  Maintainer: 'Clement THERY '
  Authors@R:  'Clment Thry '

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'MSE_loc':
MSE_loc
  Code: function(Y = Y, X = X, A = A, intercept = TRUE)
  Docs: function(Y = Y, X = X, A = A, intercept = T)
  Mismatches in argument default values:
    Name: 'intercept' Code: TRUE Docs: T

Codoc mismatches from documentation object 'cleanZ':
cleanZ
  Code: function(X = X, Z = Z, Bic_null_vect = Bic_null_vect, methode =
                 1, plot = FALSE, verbose = 1, star = FALSE)
  Docs: function(X = X, Z = Z, Bic_null_vect = Bic_null_vect, methode =
                 1, plot = F, verbose = 1, star = FALSE)
  Mismatches in argument default values:
    Name: 'plot' Code: FALSE Docs: F

Codoc mismatches from documentation object 'cleanZtest':
cleanZtest
  Code: function(Z = Z, X = X, pvalmin = 0.05, global = FALSE,
                 bonferroni = FALSE)
  Docs: function(Z = Z, X = X, pvalmin = 0.05, global = F, bonferroni =
                 F)
  Mismatches in argument default values:
    Name: 'global' Code: FALSE Docs: F
    Name: 'bonferroni' Code: FALSE Docs: F

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
** found \donttest examples: check also with --run-donttest
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'R:/run/building/build_2019-09-26-21-06/RF_PKG_CHECK/PKGS/CorReg.Rcheck/00check.log'
for details.


Run time: 541.92 seconds.