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Clustericat log file (check_x86_64_linux)

Wed Aug 13 16:18:38 2014: Checking package Clustericat (SVN revision 9) ...
* using log directory ‘/mnt/building/build_2014-08-13-16-05/RF_PKG_CHECK/PKGS/Clustericat.Rcheck’
* using R version 3.1.1 Patched (2014-08-12 r66349)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘Clustericat/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Clustericat’ version ‘0.5’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Matthieu Marbac ’
New submission
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  src/eigen/.hg_archival.txt
  src/eigen/.hgeol
  src/eigen/.krazy
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  src/eigen/.hg_archival.txt
  src/eigen/.hgeol
  src/eigen/.krazy
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Clustericat’ can be installed ... [22s/41s] OK
* checking installed package size ... NOTE
  installed size is  7.6Mb
  sub-directories of 1Mb or more:
    libs   7.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘Makefile’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  ‘Rcpp’ ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... [69s/136s] OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
Clustericat          31.349  0.012  61.253
clustercat           29.254  0.004  57.753
summary_dependencies  2.708  0.004   5.349
plot-methods          2.692  0.000   5.209
* checking PDF version of manual ... OK

NOTE: There were 6 notes.
See
  ‘/mnt/building/build_2014-08-13-16-05/RF_PKG_CHECK/PKGS/Clustericat.Rcheck/00check.log’
for details.

Run time: 260.67 seconds.