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gdsfmt log file (check_x86_64_linux)

Thu Aug 18 14:26:17 2016: Checking package gdsfmt (SVN revision 15) ...
* using log directory ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/gdsfmt.Rcheck’
* using R version 3.3.1 Patched (2016-08-17 r71112)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘gdsfmt/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gdsfmt’ version ‘1.1.3’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Xiuwen Zheng ’

Package duplicated from https://bioconductor.org/packages/3.3/bioc

Package was archived on CRAN

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2014-12-20 for repeated policy violations
    by the maintainer.  This package is now available from Bioconductor
    only, see
    .

Found the following (possibly) invalid URLs:
  URL: http://github.com/zhengxwen/unittest.gdsfmt (moved to https://github.com/zhengxwen/unittest.gdsfmt)
    From: README.md
    Status: 404
    Message: Not Found

The Title field should be in title case, current version then in title case:
‘R Interface to CoreArray Genomic Data Structure (GDS) files’
‘R Interface to CoreArray Genomic Data Structure (GDS) Files’

The Description field should not start with the package name,
  'This package' or similar.

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gdsfmt’ can be installed ... [94s/109s] OK
* checking installed package size ... NOTE
  installed size is 15.5Mb
  sub-directories of 1Mb or more:
    libs  15.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘RUnit’ ‘parallel’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  print.gds.class print.gdsn.class
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... [1s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [31s/38s]
 [31s/39s] OK
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/mnt/building/build_2016-08-18-12-24/RF_PKG_CHECK/PKGS/gdsfmt.Rcheck/00check.log’
for details.


Run time: 215.17 seconds.