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ProbeAnnotator log file (check_x86_64_linux)

Sat Mar 28 19:25:27 2015: Checking package ProbeAnnotator (SVN revision 36) ...
* using log directory ‘/mnt/building/build_2015-03-28-19-23/RF_PKG_CHECK/PKGS/ProbeAnnotator.Rcheck’
* using R version 3.1.3 Patched (2015-03-16 r67994)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘ProbeAnnotator/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ProbeAnnotator’ version ‘0.99.1’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Alexandre Thiery ’
New submission
Package has a VignetteBuilder field but no prebuilt vignette index.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ProbeAnnotator’ can be installed ... [44s/45s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ ‘org.Hs.eg.db’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annotateGetInfoFromOrganismtDb: no visible binding for global variable
  ‘org.Hs.eg.db’
annotateGetRefFromTranscriptDb: no visible binding for global variable
  ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... OK
* checking examples ... [12s/12s] OK
* checking PDF version of manual ... OK
* DONE

NOTE: There were 4 notes.
See
  ‘/mnt/building/build_2015-03-28-19-23/RF_PKG_CHECK/PKGS/ProbeAnnotator.Rcheck/00check.log’
for details.

Run time: 285.74 seconds.