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BioCro log file (build_win64)
Tue Dec 15 00:15:54 2015: Building binary for package BioCro (SVN revision 101)
using R version 3.2.3 Patched (2015-12-12 r69765) ...
* installing to library 'R:/lib/local/3.2'
* installing *source* package 'BioCro' ...
** libs
*** arch - i386
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c AuxBioCro.c -o AuxBioCro.o
AuxBioCro.c: In function 'sunML':
AuxBioCro.c:112:41: warning: variable 'Itotal' set but not used [-Wunused-but-set-variable]
AuxBioCro.c: In function 'EvapoTrans':
AuxBioCro.c:290:22: warning: variable 'gh' set but not used [-Wunused-but-set-variable]
AuxBioCro.c:290:16: warning: unused variable 'gav2' [-Wunused-variable]
AuxBioCro.c:282:9: warning: unused variable 'LayerConductance' [-Wunused-variable]
AuxBioCro.c: In function 'leafboundarylayer':
AuxBioCro.c:497:36: warning: variable 'gbh' set but not used [-Wunused-but-set-variable]
AuxBioCro.c: In function 'watstr':
AuxBioCro.c:848:23: warning: variable 'runoff2' set but not used [-Wunused-but-set-variable]
AuxBioCro.c: In function 'soilML':
AuxBioCro.c:982:19: warning: variable 'tmp3' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c AuxMaizeGro.c -o AuxMaizeGro.o
AuxMaizeGro.c: In function 'laiLizasoFun':
AuxMaizeGro.c:104:43: warning: "/*" within comment [-Wcomment]
AuxMaizeGro.c:38:23: warning: variable 'GRei' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c BioCro.c -o BioCro.o
BioCro.c: In function 'MisGro':
BioCro.c:158:9: warning: variable 'soiltemperature' set but not used [-Wunused-but-set-variable]
BioCro.c: In function 'SABioGro':
BioCro.c:914:9: warning: variable 'sCanopyAssim' set but not used [-Wunused-but-set-variable]
BioCro.c:892:6: warning: variable 'timestep' set but not used [-Wunused-but-set-variable]
BioCro.c: In function 'BioGro':
BioCro.c:1936:9: warning: variable 'Resp' set but not used [-Wunused-but-set-variable]
BioCro.c: In function 'MisGro':
BioCro.c:420:13: warning: 'WaterS.psim' may be used uninitialized in this function [-Wuninitialized]
BioCro.c:735:19: warning: 'WaterS.runoff' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c CanA.c -o CanA.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Century.c -o Century.o
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c c3CanA.c -o c3CanA.o
c3CanA.c: In function 'c3CanA':
c3CanA.c:66:19: warning: variable 'maxIDiff' set but not used [-Wunused-but-set-variable]
c3CanA.c:66:10: warning: variable 'maxIDir' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c c3EvapoTrans.c -o c3EvapoTrans.o
c3EvapoTrans.c: In function 'c3EvapoTrans':
c3EvapoTrans.c:68:42: warning: variable 'LeafboundaryLayer' set but not used [-Wunused-but-set-variable]
c3EvapoTrans.c:64:15: warning: variable 'WindSpeedTopCanopy' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c c3photo.c -o c3photo.o
c3photo.c: In function 'c3photo':
c3photo.c:43:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
c3photo.c:43:11: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
c3photo.c:33:26: warning: variable 'Ca' set but not used [-Wunused-but-set-variable]
c3photo.c: In function 'c3photoC':
c3photo.c:156:23: warning: variable 'Citr' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c c4photo.c -o c4photo.o
c4photo.c: In function 'c4photo':
c4photo.c:54:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
c4photo.c:54:11: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
c4photo.c: In function 'c4photoC':
c4photo.c:230:9: warning: variable 'IntCO2' set but not used [-Wunused-but-set-variable]
c4photo.c:229:9: warning: variable 'Gs0' set but not used [-Wunused-but-set-variable]
c4photo.c:228:9: warning: variable 'Assim0' set but not used [-Wunused-but-set-variable]
c4photo.c: In function 'McMCc4photo':
c4photo.c:475:51: warning: 'rnewAlpha' may be used uninitialized in this function [-Wuninitialized]
c4photo.c:475:16: warning: 'rnewVcmax' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c eC4photo.c -o eC4photo.o
eC4photo.c: In function 'eCanA':
eC4photo.c:74:10: warning: variable 'stomataws' set but not used [-Wunused-but-set-variable]
eC4photo.c: In function 'eC4photoC':
eC4photo.c:203:16: warning: variable 'Cs' set but not used [-Wunused-but-set-variable]
eC4photo.c:197:20: warning: variable 'Rs' set but not used [-Wunused-but-set-variable]
eC4photo.c:195:32: warning: variable 'Q10Rd' set but not used [-Wunused-but-set-variable]
eC4photo.c:195:12: warning: variable 'Q10pr' set but not used [-Wunused-but-set-variable]
eC4photo.c:192:27: warning: variable 'rh' set but not used [-Wunused-but-set-variable]
eC4photo.c: In function 'eC4photo':
eC4photo.c:360:20: warning: variable 'Rs' set but not used [-Wunused-but-set-variable]
eC4photo.c:358:32: warning: variable 'Q10Rd' set but not used [-Wunused-but-set-variable]
eC4photo.c:358:12: warning: variable 'Q10pr' set but not used [-Wunused-but-set-variable]
eC4photo.c: In function 'McMCEc4photo':
eC4photo.c:547:33: warning: variable 'poldVpr' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c maizeGro.c -o maizeGro.o
maizeGro.c: In function 'maizeGro':
maizeGro.c:168:9: warning: variable 'canopyresp' set but not used [-Wunused-but-set-variable]
maizeGro.c:128:13: warning: unused variable 'LNx' [-Wunused-variable]
maizeGro.c:108:9: warning: unused variable 'LeafLitter2' [-Wunused-variable]
maizeGro.c:107:24: warning: unused variable 'BLitter' [-Wunused-variable]
maizeGro.c:107:9: warning: unused variable 'ALitter' [-Wunused-variable]
maizeGro.c:100:15: warning: variable 'mrc2' set but not used [-Wunused-but-set-variable]
maizeGro.c:98:20: warning: variable 'SpD' set but not used [-Wunused-but-set-variable]
maizeGro.c:80:35: warning: variable 'TTc_Vn' set but not used [-Wunused-but-set-variable]
maizeGro.c:75:19: warning: variable 'maxLeaves' set but not used [-Wunused-but-set-variable]
maizeGro.c:633:13: warning: 'WaterS.psim' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O3 -Wall -std=gnu99 -mtune=core2 -c soiltemp.c -o soiltemp.o
soiltemp.c: In function 'stemp':
soiltemp.c:18:2: warning: statement with no effect [-Wunused-value]
gcc -m32 -shared -s -static-libgcc -o BioCro.dll tmp.def AuxBioCro.o AuxMaizeGro.o BioCro.o CanA.o Century.o c3CanA.o c3EvapoTrans.o c3photo.o c4photo.o eC4photo.o maizeGro.o soiltemp.o -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.2/BioCro/libs/i386
*** arch - x64
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c AuxBioCro.c -o AuxBioCro.o
AuxBioCro.c: In function 'sunML':
AuxBioCro.c:112:41: warning: variable 'Itotal' set but not used [-Wunused-but-set-variable]
AuxBioCro.c: In function 'EvapoTrans':
AuxBioCro.c:290:22: warning: variable 'gh' set but not used [-Wunused-but-set-variable]
AuxBioCro.c:290:16: warning: unused variable 'gav2' [-Wunused-variable]
AuxBioCro.c:282:9: warning: unused variable 'LayerConductance' [-Wunused-variable]
AuxBioCro.c: In function 'leafboundarylayer':
AuxBioCro.c:497:36: warning: variable 'gbh' set but not used [-Wunused-but-set-variable]
AuxBioCro.c: In function 'watstr':
AuxBioCro.c:848:23: warning: variable 'runoff2' set but not used [-Wunused-but-set-variable]
AuxBioCro.c: In function 'soilML':
AuxBioCro.c:982:19: warning: variable 'tmp3' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c AuxMaizeGro.c -o AuxMaizeGro.o
AuxMaizeGro.c: In function 'laiLizasoFun':
AuxMaizeGro.c:104:43: warning: "/*" within comment [-Wcomment]
AuxMaizeGro.c:38:23: warning: variable 'GRei' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c BioCro.c -o BioCro.o
BioCro.c: In function 'MisGro':
BioCro.c:158:9: warning: variable 'soiltemperature' set but not used [-Wunused-but-set-variable]
BioCro.c: In function 'SABioGro':
BioCro.c:914:9: warning: variable 'sCanopyAssim' set but not used [-Wunused-but-set-variable]
BioCro.c:892:6: warning: variable 'timestep' set but not used [-Wunused-but-set-variable]
BioCro.c: In function 'BioGro':
BioCro.c:1936:9: warning: variable 'Resp' set but not used [-Wunused-but-set-variable]
BioCro.c: In function 'MisGro':
BioCro.c:420:13: warning: 'WaterS.psim' may be used uninitialized in this function [-Wuninitialized]
BioCro.c:735:19: warning: 'WaterS.runoff' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c CanA.c -o CanA.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Century.c -o Century.o
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c c3CanA.c -o c3CanA.o
c3CanA.c: In function 'c3CanA':
c3CanA.c:66:19: warning: variable 'maxIDiff' set but not used [-Wunused-but-set-variable]
c3CanA.c:66:10: warning: variable 'maxIDir' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c c3EvapoTrans.c -o c3EvapoTrans.o
c3EvapoTrans.c: In function 'c3EvapoTrans':
c3EvapoTrans.c:68:42: warning: variable 'LeafboundaryLayer' set but not used [-Wunused-but-set-variable]
c3EvapoTrans.c:64:15: warning: variable 'WindSpeedTopCanopy' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c c3photo.c -o c3photo.o
c3photo.c: In function 'c3photo':
c3photo.c:43:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
c3photo.c:43:11: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
c3photo.c:33:26: warning: variable 'Ca' set but not used [-Wunused-but-set-variable]
c3photo.c: In function 'c3photoC':
c3photo.c:156:23: warning: variable 'Citr' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c c4photo.c -o c4photo.o
c4photo.c: In function 'c4photo':
c4photo.c:54:15: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
c4photo.c:54:11: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
c4photo.c: In function 'c4photoC':
c4photo.c:230:9: warning: variable 'IntCO2' set but not used [-Wunused-but-set-variable]
c4photo.c:229:9: warning: variable 'Gs0' set but not used [-Wunused-but-set-variable]
c4photo.c:228:9: warning: variable 'Assim0' set but not used [-Wunused-but-set-variable]
c4photo.c: In function 'McMCc4photo':
c4photo.c:475:51: warning: 'rnewAlpha' may be used uninitialized in this function [-Wuninitialized]
c4photo.c:475:16: warning: 'rnewVcmax' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c eC4photo.c -o eC4photo.o
eC4photo.c: In function 'eCanA':
eC4photo.c:74:10: warning: variable 'stomataws' set but not used [-Wunused-but-set-variable]
eC4photo.c: In function 'eC4photoC':
eC4photo.c:203:16: warning: variable 'Cs' set but not used [-Wunused-but-set-variable]
eC4photo.c:197:20: warning: variable 'Rs' set but not used [-Wunused-but-set-variable]
eC4photo.c:195:32: warning: variable 'Q10Rd' set but not used [-Wunused-but-set-variable]
eC4photo.c:195:12: warning: variable 'Q10pr' set but not used [-Wunused-but-set-variable]
eC4photo.c:192:27: warning: variable 'rh' set but not used [-Wunused-but-set-variable]
eC4photo.c: In function 'eC4photo':
eC4photo.c:360:20: warning: variable 'Rs' set but not used [-Wunused-but-set-variable]
eC4photo.c:358:32: warning: variable 'Q10Rd' set but not used [-Wunused-but-set-variable]
eC4photo.c:358:12: warning: variable 'Q10pr' set but not used [-Wunused-but-set-variable]
eC4photo.c: In function 'McMCEc4photo':
eC4photo.c:547:33: warning: variable 'poldVpr' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c maizeGro.c -o maizeGro.o
maizeGro.c: In function 'maizeGro':
maizeGro.c:168:9: warning: variable 'canopyresp' set but not used [-Wunused-but-set-variable]
maizeGro.c:128:13: warning: unused variable 'LNx' [-Wunused-variable]
maizeGro.c:108:9: warning: unused variable 'LeafLitter2' [-Wunused-variable]
maizeGro.c:107:24: warning: unused variable 'BLitter' [-Wunused-variable]
maizeGro.c:107:9: warning: unused variable 'ALitter' [-Wunused-variable]
maizeGro.c:100:15: warning: variable 'mrc2' set but not used [-Wunused-but-set-variable]
maizeGro.c:98:20: warning: variable 'SpD' set but not used [-Wunused-but-set-variable]
maizeGro.c:80:35: warning: variable 'TTc_Vn' set but not used [-Wunused-but-set-variable]
maizeGro.c:75:19: warning: variable 'maxLeaves' set but not used [-Wunused-but-set-variable]
maizeGro.c:633:13: warning: 'WaterS.psim' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -std=gnu99 -mtune=core2 -c soiltemp.c -o soiltemp.o
soiltemp.c: In function 'stemp':
soiltemp.c:18:2: warning: statement with no effect [-Wunused-value]
gcc -m64 -shared -s -static-libgcc -o BioCro.dll tmp.def AuxBioCro.o AuxMaizeGro.o BioCro.o CanA.o Century.o c3CanA.o c3EvapoTrans.o c3photo.o c4photo.o eC4photo.o maizeGro.o soiltemp.o -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.2/BioCro/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* MD5 sums
packaged installation of 'BioCro' as BioCro_0.268-0.zip
* DONE (BioCro)
Run time: 16.43 seconds.
