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rfTools log file (check_x86_64_linux)

Thu Aug 18 10:10:25 2016: Checking package rfTools (SVN revision 353) ...
* using log directory ‘/mnt/building/build_2016-08-18-10-04/RF_PKG_CHECK/PKGS/rfTools.Rcheck’
* using R version 3.3.1 Patched (2016-08-14 r71097)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘rfTools/DESCRIPTION’ ... OK
* this is package ‘rfTools’ version ‘0.5-9.8’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Stefan Theussl ’

New submission

The Date field is over a month old.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rfTools’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' call not declared from: ‘XML’
'library' or 'require' call to ‘XML’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Missing object imported by a ':::' call: ‘utils:::.find_bundles’
Unexported objects imported by ':::' calls:
  ‘tools:::.check_package_description_authors_at_R_field’
  ‘tools:::.expand_package_description_db_R_fields’
  ‘tools:::.get_standard_package_names’
  ‘tools:::.get_standard_repository_db_fields’ ‘tools:::.is_ASCII’
  ‘tools:::.is_ISO_8859’ ‘tools:::.keep_white_description_fields’
  ‘tools:::.split_description’ ‘tools:::.strip_whitespace’
  ‘tools:::.valid_maintainer_field_regexp’ ‘tools:::.write_description’
  ‘utils:::.clean_up_dependencies’ ‘utils:::.find_install_order’
  ‘utils:::.make_dependency_list’
  See the note in ?`:::` about the use of this operator.
  Including base/recommended package(s):
  ‘tools’ ‘utils’
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.build_binary_from_tarball_mac’ ‘get_buildlog’ ‘get_check_args’
  ‘rf_connect’ ‘rf_disconnect’ ‘rf_get_db_con’ ‘rf_show_pkgs’
  ‘write_epilog’ ‘write_prolog’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.get_package_version_from_sources: no visible global function
  definition for ‘packageDescription’
.make_pkg_libs : : no visible global function definition for
  ‘install.packages’
.make_pkg_libs : : no visible global function definition for
  ‘contrib.url’
.pkgs_forced_rforge_depends : : no visible global function
  definition for ‘na.omit’
.rf_check_package_binary_areas: no visible global function definition
  for ‘contrib.url’
.rf_release_packages: no visible global function definition for
  ‘available.packages’
.rf_release_packages: no visible global function definition for
  ‘contrib.url’
.rf_release_packages : : no visible global function
  definition for ‘contrib.url’
.rf_remove_package_from_release: no visible global function definition
  for ‘available.packages’
.rf_remove_package_from_release: no visible global function definition
  for ‘contrib.url’
.svn_history: no visible global function definition for ‘read.table’
check_results_diff_db: no visible global function definition for
  ‘read.csv’
read_svn_verbose_xml_log : : no visible binding for global
  variable ‘xmlValue’
read_svn_verbose_xml_log : : no visible binding for global
  variable ‘xmlAttrs’
resolve_dependency_structure: no visible global function definition for
  ‘available.packages’
resolve_dependency_structure: no visible global function definition for
  ‘contrib.url’
rf_build_packages: no visible global function definition for ‘read.csv’
rf_build_packages: no visible global function definition for
  ‘contrib.url’
rf_check_packages: no visible global function definition for
  ‘contrib.url’
rf_check_packages: no visible global function definition for ‘read.csv’
rf_check_packages: no visible global function definition for
  ‘available.packages’
rf_pkg_status: no visible global function definition for
  ‘available.packages’
rf_pkg_status: no visible global function definition for ‘contrib.url’
rf_pkg_status: no visible global function definition for ‘na.omit’
rf_release_packages: no visible global function definition for
  ‘read.csv’
rf_release_packages: no visible global function definition for ‘tail’
rf_update_repo: no visible global function definition for ‘contrib.url’
start_virtual_X11_fb: no visible global function definition for ‘runif’
update_package_library: no visible global function definition for
  ‘update.packages’
update_package_library: no visible global function definition for
  ‘installed.packages’
update_package_library: no visible global function definition for
  ‘available.packages’
update_package_library: no visible global function definition for
  ‘contrib.url’
update_package_library: no visible global function definition for
  ‘install.packages’
update_package_library: no visible global function definition for
  ‘na.omit’
write_check_csv: no visible global function definition for ‘write.csv’
Undefined global functions or variables:
  available.packages contrib.url install.packages installed.packages
  na.omit packageDescription read.csv read.table runif tail
  update.packages write.csv xmlAttrs xmlValue
Consider adding
  importFrom("stats", "na.omit", "runif")
  importFrom("utils", "available.packages", "contrib.url",
             "install.packages", "installed.packages",
             "packageDescription", "read.csv", "read.table", "tail",
             "update.packages", "write.csv")
to your NAMESPACE file.
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘rf_build_control’ ‘rf_build_packages’ ‘rf_check_packages’
  ‘rf_db_install’ ‘rf_db_remove’ ‘rf_export_and_build_pkgs’
  ‘rf_get_svn_repos’ ‘rf_pkg_status’ ‘rf_prepare_build’
  ‘rf_read_configuration’ ‘rf_release_packages’
  ‘rf_remove_obsolete_pkg’ ‘rf_set_build_offline’
  ‘rf_takeover_prepared_build’ ‘rf_update_repo’
  ‘rf_write_configuration’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking examples ... NONE
* checking PDF version of manual ... OK
* checking for code which exercises the package ... WARNING
No examples, no tests, no vignettes
* DONE

Status: 3 WARNINGs, 2 NOTEs
See
  ‘/mnt/building/build_2016-08-18-10-04/RF_PKG_CHECK/PKGS/rfTools.Rcheck/00check.log’
for details.


Run time: 23.9 seconds.

Additional Logs:   00install.out
Thanks to:
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