R Development Page

BayesSingleSub log file (check_x86_64_linux)

Fri Sep 13 01:15:47 2013: Checking package BayesSingleSub (SVN revision 334) ...
* using log directory ‘/mnt/building/build_2013-09-03-16-03/RF_PKG_CHECK/PKGS/BayesSingleSub.Rcheck’
* using R version 3.0.1 Patched (2013-08-27 r63742)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘BayesSingleSub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BayesSingleSub’ version ‘0.6.2’
* checking CRAN incoming feasibility ... OK
Maintainer: ‘Richard D. Morey ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesSingleSub’ can be installed ... [2s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file ‘/mnt/building/build_2013-09-03-16-03/RF_PKG_CHECK/PKGS/BayesSingleSub.Rcheck/00_pkg_src/BayesSingleSub/man/trendtest.Gibbs.AR.Rd’:
  \usage lines wider than 90 characters:
     trendtest.Gibbs.AR(before, after, iterations = 1000, intArea = c(-0.2,0.2), slpArea = c(-0.2, 0.2),  r.scaleInt = 1, r.scaleSlp = 1, 
                             alphaTheta = 1, betaTheta = 5, sdMet = 0.3, progress = TRUE, return.chains = FALSE)
  \examples lines wider than 100 characters:
     output = trendtest.Gibbs.AR(data[1:10], data[11:25], return.chains = TRUE, intArea = c(-0.2,0.2), slpArea = c(-0.2, 0.2))

Rd file ‘/mnt/building/build_2013-09-03-16-03/RF_PKG_CHECK/PKGS/BayesSingleSub.Rcheck/00_pkg_src/BayesSingleSub/man/trendtest.MC.AR.Rd’:
  \usage lines wider than 90 characters:
     trendtest.MC.AR(before, after, iterations = 1000, r.scaleInt = 1, r.scaleSlp = 1, alphaTheta = 1, betaTheta = 5, progress = TRUE)

Rd file ‘/mnt/building/build_2013-09-03-16-03/RF_PKG_CHECK/PKGS/BayesSingleSub.Rcheck/00_pkg_src/BayesSingleSub/man/ttest.Gibbs.AR.Rd’:
  \usage lines wider than 90 characters:
     ttest.Gibbs.AR(before, after, iterations = 1000, areaNull = c(-0.2, 0.2), treat = NULL, r.scale = 1, alphaTheta = 1, 

Rd file ‘/mnt/building/build_2013-09-03-16-03/RF_PKG_CHECK/PKGS/BayesSingleSub.Rcheck/00_pkg_src/BayesSingleSub/man/ttest.MCGQ.AR.Rd’:
  \usage lines wider than 90 characters:
     ttest.MCGQ.AR(before, after, iterations = 1000, treat = NULL, method = "MC", r.scale = 1, alphaTheta = 1, betaTheta = 5)

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/mnt/building/build_2013-09-03-16-03/RF_PKG_CHECK/PKGS/BayesSingleSub.Rcheck/00check.log’
for details.

Run time: 24.82 seconds.