R Development Page
Contributed R Packages
Below is a list of all packages provided by project Parent-specific DNA copy numbers (abo).
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
| PSCBS | Analysis of Parent-Specific DNA Copy Numbers | |||||||||||
| Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported. | ||||||||||||
| Version: 0.43.0 | Last change: 2014-06-15 02:21:38+02 | Rev.: 574 | ||||||||||||
Download:
 (.tar.gz) |
 (.zip) |
Build status: Failed to build | Stable Release: Get PSCBS 0.67.0 from CRAN | ||||||||||||
R install command:
install.packages("PSCBS", repos="http://R-Forge.R-project.org") | ||||||||||||
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| PSCBS.data | Matched tumor-normal SNP microarray example data for the PSCBS package | |||||||||||
| This package contains data that accompany the PSCBS package implementing the Paired Parent-Specific Circular Binary Segmentation (Paired PSCBS) method. The data are on from a matched tumor-normal pair obtained using SNP microarrays. To save space, only data from one chromosome is included. | ||||||||||||
| Version: 0.35.0 | Last change: 2013-10-15 07:47:50+02 | Rev.: 487 | ||||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Failed to build | ||||||||||||
R install command:
install.packages("PSCBS.data", repos="http://R-Forge.R-project.org") | ||||||||||||
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| babel | Ribosome profiling data analysis | |||||||||||
| Implements babel routines for identifying unusual ribosome protected fragment counts given mRNA counts | ||||||||||||
| Version: 0.2-6 | Last change: 2014-06-13 02:39:54+02 | Rev.: 572 | ||||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Failed to build | Stable Release: Get babel 0.3-0 from CRAN | ||||||||||||
R install command:
install.packages("babel", repos="http://R-Forge.R-project.org") | ||||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
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