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oro.dti log file (check_x86_64_linux)

Mon Apr 16 16:13:07 2012: Checking package oro.dti (SVN revision 146) ...
* using log directory ‘/mnt/building/build_2012-04-13-10-57/RF_PKG_CHECK/PKGS/oro.dti.Rcheck’
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘oro.dti/DESCRIPTION’ ... OK
* this is package ‘oro.dti’ version ‘0.1.0’
* checking CRAN incoming feasibility ... NOTE
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking whether package ‘oro.dti’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘oro.dti/R/zzz.R’:
  .onAttach calls:
    cat("\n", pkg, ": Rigorous - Diffusion Tensor Imaging (version = ",     as.character(sessionInfo()$otherPkgs$oro.dti["Version"]),     ")\n", sep = "", fill = TRUE)

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in ?.onAttach.

* checking Rd files ... NOTE
prepare_Rd: dti.Rd:44: Dropping empty section \keyword
prepare_Rd: dti.Rd:36-37: Dropping empty section \details
prepare_Rd: dti.Rd:38-39: Dropping empty section \value
prepare_Rd: imageTensor.Rd:24-25: Dropping empty section \details
prepare_Rd: imageTensor.Rd:26-27: Dropping empty section \value
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘FA’ ‘FA.volume’ ‘boot.wild’ ‘eigen.slice’ ‘eigen.slice.boot’
  ‘eigen.volume’ ‘expm’ ‘fa.boot’ ‘fractional.anisotropy’ ‘logm’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... WARNING
Argument items with no description in Rd object 'Diffusion Tensor Imaging':
  ‘slice’ ‘volume’ ‘G’ ‘b’ ‘weight’ ‘mask’ ‘boot’ ‘Nboot’ ‘HC’
  ‘verbose’ ‘delta’ ‘scan.seq’

Argument items with no description in Rd object 'imageTensor':
  ‘mat3d’ ‘weights’ ‘plot’ ‘add’ ‘exclude’ ‘...’

* checking for unstated dependencies in examples ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There were 3 notes.
See
  ‘/mnt/building/build_2012-04-13-10-57/RF_PKG_CHECK/PKGS/oro.dti.Rcheck/00check.log’
for details.

Run time: 18.99 seconds.