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oro.nifti log file (check_x86_64_linux)

Sun Jan 18 15:07:02 2015: Checking package oro.nifti (SVN revision 346) ...
* using log directory ‘/mnt/building/build_2015-01-18-15-04/RF_PKG_CHECK/PKGS/oro.nifti.Rcheck’
* using R version 3.1.2 Patched (2015-01-12 r67453)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘oro.nifti/DESCRIPTION’ ... OK
* this is package ‘oro.nifti’ version ‘0.4.3’
* checking CRAN incoming feasibility ... NOTE
Maintainer: ‘Brandon Whitcher ’
Components with restrictions and base license permitting such:
  BSD_3_clause + file LICENSE
File 'LICENSE':
  YEAR: 2010, 2011, 2012, 2013, 2014, 2015
  COPYRIGHT HOLDER: Brandon Whitcher
  ORGANIZATION: Rigorous Analytics Ltd.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped

Package which this enhances but not available for checking: ‘fmri’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘oro.nifti’ can be installed ... [3s/3s] OK
* checking installed package size ... NOTE
  installed size is  6.5Mb
  sub-directories of 1Mb or more:
    nifti   3.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... WARNING
  ‘gs+qpdf’ made some significant size reductions:
     compacted ‘nifti.pdf’ from 807Kb to 322Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/14s] OK
* checking differences from ‘oro.nifti-Ex.Rout’ to ‘oro.nifti-Ex.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
   ‘nifti.Rnw’ ... [39s/39s] OK
 [39s/39s] OK
* checking re-building of vignette outputs ... [43s/44s] OK
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  ‘/mnt/building/build_2015-01-18-15-04/RF_PKG_CHECK/PKGS/oro.nifti.Rcheck/00check.log’
for details.

Run time: 168 seconds.