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qaqc log file (check_x86_64_windows)

* using log directory 'R:/run/building/build_2012-04-13-10-57/RF_PKG_CHECK/PKGS/qaqc.Rcheck'
* using R version 2.15.0 Patched (2012-04-09 r58947)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'qaqc/DESCRIPTION' ... OK
* this is package 'qaqc' version '0.1.4'
* checking CRAN incoming feasibility ...Warning in url(sprintf("%s/src/contrib/PACKAGES.gz", u), "rb") :
  unable to connect to 'www.omegahat.org' on port 80.
NB: need Internet access to use CRAN incoming checks
 OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'qaqc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
graphImagePatientPosition: no visible binding for global variable
  'contentTime'
graphImagePatientPosition: no visible binding for global variable 'ipp'
graphImagePatientPosition: no visible binding for global variable
  'fname'
graphImagePatientPosition: no visible binding for global variable
  'uid.dcm'
graphImagePatientPosition: no visible binding for global variable
  'movingDimensions'
qaqc: no visible binding for global variable 'clinicalTrialProtocolID'
qaqc: no visible binding for global variable 'clinicalTrialSiteID'
qaqc: no visible binding for global variable 'patientID'
qaqc: no visible binding for global variable 'clinicalTrialTimePointID'
qaqc: no visible binding for global variable 'studyDate'
qaqc: no visible binding for global variable 'studyInstanceUID'
qaqc: no visible binding for global variable 'institutionName'
qaqc: no visible binding for global variable 'seriesDescription'
qaqc: no visible binding for global variable 'modality'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'graphImagePatientPosition'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking differences from 'qaqc-Ex.Rout' to 'qaqc-Ex.Rout.save' ...
3c3
< oro.dicom: Rigorous - DICOM Input / Output (version = 0.3.4)
---
> oro.dicom: Rigorous - DICOM Input / Output (version = 0.3.0)
5,6d4
< Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'XML'
8c6
< oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output (version = 0.3.1)
---
> oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output (version = 0.2.7)
 OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'R:/run/building/build_2012-04-13-10-57/RF_PKG_CHECK/PKGS/qaqc.Rcheck/00check.log'
for details.

Run time: 96.02 seconds.