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WeightedCluster log file (check_x86_64_linux)

Wed Apr 17 14:25:36 2024: Checking package WeightedCluster (SVN revision 1425) ...
* using log directory ‘/srv/rf/building/build_2024-04-17-14-23/RF_PKG_CHECK/PKGS/WeightedCluster.Rcheck’
* using R version 4.3.3 Patched (2024-04-09 r86391)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Debian 12.2.0-14) 12.2.0
    GNU Fortran (Debian 12.2.0-14) 12.2.0
* running under: Debian GNU/Linux 12 (bookworm)
* using session charset: UTF-8
* using option ‘--as-cran’
* checking for file ‘WeightedCluster/DESCRIPTION’ ... OK
* this is package ‘WeightedCluster’ version ‘1.7’
* checking CRAN incoming feasibility ... [5s/8s] Note_to_CRAN_maintainers
Maintainer: ‘Matthias Studer ’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘WeightedCluster’ can be installed ... [13s/13s] OK
* used C compiler: ‘gcc (Debian 12.2.0-14) 12.2.0’
* used C++ compiler: ‘g++ (Debian 12.2.0-14) 12.2.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/14s] NOTE
seqclararange: no visible binding for global variable ‘j’
Undefined global functions or variables:
  j
* checking Rd files ... [0s/0s] NOTE
prepare_Rd: bootclustrange.Rd:68-70: Dropping empty section \examples
prepare_Rd: plot.seqclararange.Rd:34-35: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'seqclararange.Rd':
  \examples lines wider than 100 characters:
                                                                                              R = 3, sample.size = 10,  parallel=FALSE)

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... WARNING
  ‘gs+qpdf’ made some significant size reductions:
     compacted ‘WeightedCluster.pdf’ from 1268Kb to 451Kb
     compacted ‘WeightedClusterFR.pdf’ from 1268Kb to 450Kb
     compacted ‘WeightedClusterPreview.pdf’ from 471Kb to 127Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [25s/25s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
seqclararange 8.915  0.119   9.036
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘onecluster.R’ [2s/2s]
  Running ‘typic_analysis.R’ [4s/4s]
 [6s/6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [64s/64s] OK
* checking PDF version of manual ... [7s/7s] OK
* checking HTML version of manual ... [0s/0s] NOTE
Skipping checking HTML validation: no command 'tidy' found
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE

Status: 1 WARNING, 5 NOTEs
See
  ‘/srv/rf/building/build_2024-04-17-14-23/RF_PKG_CHECK/PKGS/WeightedCluster.Rcheck/00check.log’
for details.


Run time: 176.32 seconds.