R Development Page
CRF log file (build_win64)
Sat Nov 30 03:57:02 2019: Building binary for package CRF (SVN revision 51)
using R version 3.6.1 Patched (2019-11-28 r77475) ...
* installing to library 'R:/lib/local/3.6'
* installing *source* package 'CRF' ...
** using staged installation
** libs
*** arch - i386
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c BP.cpp -o BP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c CRF.cpp -o CRF.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Clamp.cpp -o Clamp.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Chain.cpp -o Decode_Chain.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Cutset.cpp -o Decode_Cutset.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Exact.cpp -o Decode_Exact.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Greedy.cpp -o Decode_Greedy.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_ICM.cpp -o Decode_ICM.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Junction.cpp -o Decode_Junction.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_LBP.cpp -o Decode_LBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_RBP.cpp -o Decode_RBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Sample.cpp -o Decode_Sample.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_TRBP.cpp -o Decode_TRBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Tree.cpp -o Decode_Tree.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c FibHeap.cpp -o FibHeap.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Chain.cpp -o Infer_Chain.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Cutset.cpp -o Infer_Cutset.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Exact.cpp -o Infer_Exact.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Junction.cpp -o Infer_Junction.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_LBP.cpp -o Infer_LBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_RBP.cpp -o Infer_RBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Sample.cpp -o Infer_Sample.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_TRBP.cpp -o Infer_TRBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Tree.cpp -o Infer_Tree.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c JunctionTree.cpp -o JunctionTree.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c LoopyBP.cpp -o LoopyBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Make_AdjInfo.cpp -o Make_AdjInfo.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Potential.cpp -o Potential.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c ResidualBP.cpp -o ResidualBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Chain.cpp -o Sample_Chain.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Cutset.cpp -o Sample_Cutset.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Exact.cpp -o Sample_Exact.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Gibbs.cpp -o Sample_Gibbs.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Junction.cpp -o Sample_Junction.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Tree.cpp -o Sample_Tree.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c TRBP.cpp -o TRBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Train.cpp -o Train.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c TreeBP.cpp -o TreeBP.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c utils.cpp -o utils.o
c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CRF.dll tmp.def BP.o CRF.o Clamp.o Decode_Chain.o Decode_Cutset.o Decode_Exact.o Decode_Greedy.o Decode_ICM.o Decode_Junction.o Decode_LBP.o Decode_RBP.o Decode_Sample.o Decode_TRBP.o Decode_Tree.o FibHeap.o Infer_Chain.o Infer_Cutset.o Infer_Exact.o Infer_Junction.o Infer_LBP.o Infer_RBP.o Infer_Sample.o Infer_TRBP.o Infer_Tree.o JunctionTree.o LoopyBP.o Make_AdjInfo.o Potential.o ResidualBP.o Sample_Chain.o Sample_Cutset.o Sample_Exact.o Sample_Gibbs.o Sample_Junction.o Sample_Tree.o TRBP.o Train.o TreeBP.o utils.o -LR:/base/local215/lib/i386 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/i386 -lR
installing to R:/lib/local/3.6/00LOCK-CRF/00new/CRF/libs/i386
*** arch - x64
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c BP.cpp -o BP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c CRF.cpp -o CRF.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Clamp.cpp -o Clamp.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Chain.cpp -o Decode_Chain.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Cutset.cpp -o Decode_Cutset.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Exact.cpp -o Decode_Exact.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Greedy.cpp -o Decode_Greedy.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_ICM.cpp -o Decode_ICM.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Junction.cpp -o Decode_Junction.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_LBP.cpp -o Decode_LBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_RBP.cpp -o Decode_RBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Sample.cpp -o Decode_Sample.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_TRBP.cpp -o Decode_TRBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Decode_Tree.cpp -o Decode_Tree.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c FibHeap.cpp -o FibHeap.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Chain.cpp -o Infer_Chain.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Cutset.cpp -o Infer_Cutset.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Exact.cpp -o Infer_Exact.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Junction.cpp -o Infer_Junction.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_LBP.cpp -o Infer_LBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_RBP.cpp -o Infer_RBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Sample.cpp -o Infer_Sample.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_TRBP.cpp -o Infer_TRBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Infer_Tree.cpp -o Infer_Tree.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c JunctionTree.cpp -o JunctionTree.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c LoopyBP.cpp -o LoopyBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Make_AdjInfo.cpp -o Make_AdjInfo.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Potential.cpp -o Potential.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c ResidualBP.cpp -o ResidualBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Chain.cpp -o Sample_Chain.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Cutset.cpp -o Sample_Cutset.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Exact.cpp -o Sample_Exact.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Gibbs.cpp -o Sample_Gibbs.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Junction.cpp -o Sample_Junction.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Sample_Tree.cpp -o Sample_Tree.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c TRBP.cpp -o TRBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c Train.cpp -o Train.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c TreeBP.cpp -o TreeBP.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"R:/lib/R/R-patched/include" -DNDEBUG -I"R:/base/local215/include" -O2 -Wall -mtune=generic -c utils.cpp -o utils.o
c:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CRF.dll tmp.def BP.o CRF.o Clamp.o Decode_Chain.o Decode_Cutset.o Decode_Exact.o Decode_Greedy.o Decode_ICM.o Decode_Junction.o Decode_LBP.o Decode_RBP.o Decode_Sample.o Decode_TRBP.o Decode_Tree.o FibHeap.o Infer_Chain.o Infer_Cutset.o Infer_Exact.o Infer_Junction.o Infer_LBP.o Infer_RBP.o Infer_Sample.o Infer_TRBP.o Infer_Tree.o JunctionTree.o LoopyBP.o Make_AdjInfo.o Potential.o ResidualBP.o Sample_Chain.o Sample_Cutset.o Sample_Exact.o Sample_Gibbs.o Sample_Junction.o Sample_Tree.o TRBP.o Train.o TreeBP.o utils.o -LR:/base/local215/lib/x64 -LR:/base/local215/lib -LR:/lib/R/R-patched/bin/x64 -lR
installing to R:/lib/local/3.6/00LOCK-CRF/00new/CRF/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CRF'
finding HTML links ... done
CRF-package html
Chain html
Clique html
Loop html
Rain html
Small html
Tree html
clamp.crf html
clamp.reset html
crf.nll html
crf.update html
decode.block html
decode.chain html
decode.conditional html
decode.cutset html
decode.exact html
decode.greedy html
decode.icm html
decode.ilp html
decode.junction html
decode.lbp html
decode.marginal html
decode.rbp html
decode.sample html
decode.trbp html
decode.tree html
duplicate.crf html
get.logPotential html
get.potential html
infer.chain html
infer.conditional html
infer.cutset html
infer.exact html
infer.junction html
infer.lbp html
infer.rbp html
infer.sample html
infer.trbp html
infer.tree html
make.crf html
make.features html
make.par html
mrf.nll html
mrf.stat html
mrf.update html
sample.chain html
sample.conditional html
sample.cutset html
sample.exact html
sample.gibbs html
sample.junction html
sample.tree html
sub.crf html
train.crf html
train.mrf html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
*** arch - i386
*** arch - x64
** testing if installed package can be loaded from final location
*** arch - i386
*** arch - x64
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CRF' as CRF_0.4-3.zip
* DONE (CRF)
Run time: 39.09 seconds.
