Forum: help

install R package [ Reply ]
By: yue li on 2021-06-11 13:10

HEllo,

I want to install R package. Every time it comes out: "Error in download.file(url, destfile, method, mode = "wb", ...) ". I have no idea of that.

Any suggestion?

Thanks in advance for any help!

Best,

Yue

```> BiocManager::install("fgsea")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
CRAN: https://cloud.r-project.org

Bioconductor version 3.6 (BiocManager 1.30.15), R 3.4.4 (2018-03-15)
Installing package(s) 'BiocVersion', 'fgsea'
also installing the dependencies ‘formatR’, ‘lambda.r’, ‘futile.options’, ‘futile.logger’, ‘snow’, ‘BiocParallel’

Error in download.file(url, destfile, method, mode = "wb", ...)

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0

locale:
[1] LC_CTYPE=zh_CN.UTF-8 LC_NUMERIC=C LC_TIME=zh_CN.UTF-8 LC_COLLATE=zh_CN.UTF-8
[5] LC_MONETARY=zh_CN.UTF-8 LC_MESSAGES=zh_CN.UTF-8 LC_PAPER=zh_CN.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] BiocManager_1.30.15 compiler_3.4.4 tools_3.4.4 ```