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All development of msap moved to github
For some convenience reasons, the development of msap (source code and issue tracker) is now maintained in github: https://github.com/anpefi/msap
Problems with subset?: Update to 1.1.9
A bug in msap <=1.1.8 has been reported. In some circumstances the program crashes while calculating the pairwisePhiST reporting the following message:
msap 1.1.8 on CRAN now
A new stable version of msap is available now in the CRAN. It solves some possible problems arisen in previous versions so it is highly recommended to update msap to this new version.
The paper describing msap in Molecular Ecology Resources
The paper, describing msap and its utility, for Molecular Ecology Resources is available as online early view at http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12064/abstract.
version 1.1.2 on CRAN now
It has been published a new update on the CRAN. Now it is possible to get distance matrices and transformed data for MSL and NML as a returning list from the msap function. This is useful for those interested in further self-made analysis within R.
Very important update: new version fixing a bug
A new revision (31) has been committed and it would build the version 1.1.1 of msap. This is a VERY IMPORTANT UPDATE as it fixes a bug present in previous versions that could slightly affect the result of any analysis made with msap. In the manual is stated that polymorphic loci were those with at least two occurrences of both states (methylayted and unmethylated), but there was an error in the code that consider as polymorphic those with more than two occurrences of both states. This could be a relevant bug making that, in some datasets, msap underestimated the number of polymorphic loci.
msap 1.1.0 released
A new version of msap has been released at CRAN. As major new feature, now the fragment classification is done for each primer combination independently (allowing for different error rates for each). Furthermore, the 'uninformative' parameters has been changed by 'no.bands' (see manual for details).
New version: msap 1.0.2
There is a new version available in the Daily repository (soon also in CRAN). This version (1.0.2) fixes a bug causing crash of the program when dealing with datasets without NML.
version 1.0
msap 1.0 is available at the CRAN. This is the first full stable version with all analyses that could be considered as a 'minimum'. Further versions with some additions will be coming soon.
version 1.0 in cran
msap 1.0 is available at the CRAN. This is the first full stable version with all analyses that could be considered as a 'minimum'. Further versions with some additions will be coming soon.
