Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
35 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
AtelieR  The AtelieR package is a collection of simulation and computation programs for statistical inference and bayesian model comparisons, with a GTK GUI. Specialized functions for automatic search of the best model by Bayes factors are provided.  
Tags: Bayesian, GUI, Graphical User Interface, distributions, educational tool, generalized linear models, model comparison, model estimation, statistical education, teaching  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110706 19:01 
BCE  Bayesian Compositional Estimator. Estimating sample (taxonomic) composition from biomarker data. Biologists may know this method as "Chemtax".  
Tags: Bayesian, Multivariate Regression, Multivariate Techniques, taxonomic diversity  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20080415 06:56 
BVSflex  The BVSflex package implements efficient Bayesian variable selection models for highdimensional input data. A flexible selection prior allows the incorporation of additional information, e.g. a second data source including all sources of variation.  
Tags: Bayesian, variable selection, Bioinformatics, logistic, integrative  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20131113 11:35 
Bayes factors  R functions for the computation of Bayes factors in common psychological experimental designs  
Tags: ANOVA, Bayesian, linear models, marginal likelihood, mixed effect models, model comparison, model estimation, model selection, regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090929 14:02 
Bayesian AuTomated Metabolite Analyser  Bayesian AuTomated Metabolite Analyser for NMR data (BATMAN). A package for estimating metabolite concentrations from Nuclear Magnetic Resonance spectral data using a specialised MCMC algorithm.  
Tags: NMR, Metabolomics, Bayesian, Bioinformatics, Chemoinformatics  
Activity Percentile: 0 Activity Ranking: 0 Registered: 20110310 13:46 
Bayesian Model for Rare Variant analysis  BMRV is an R package that can be readily applied to rare variant (RV) association analysis for various traits (continuous, binary and ordinal), designs (independent, family and twin) and genotype data (sequence and imputated).  
Tags: Bayesian, Biostatistics, Genetics, Gibbs sampling, Sequence analysis, genetic interaction, genetics, linear models, mixed effect models  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20151211 21:50 
Bayesian TimeStrat. Population Analysis  BTSPAS provides advanced Bayesian methods to estimate abundance and runtiming from temporallystratified Petersen markrecapture experiments. Methods include hierarchical modelling of the capture probabilities and spline smoothing of the daily run size.  
Tags: markrecapture, fisheries, Bayesian, Ecology, ecological models, ecology  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20091014 21:55 
Bayesian inference for diffusions  Bayesian inference in twodimensional diffusion models where one of the coordinates may be unobserved.  
Tags: Bayesian  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140103 08:41 
Bayesian spatial regression  Bayesian spatial regression (spdep2) is a package to complement existing model fitting functions in spdep, based on reimplementing MCMC techniques due to LeSage and Pace  
Tags: spatial, spatial econometrics, spatial regression, Bayesian  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090203 07:30 
CNAV  A hidden Markov model approach is used to infer frequencies and haplotype phases of genotypes containing joint allelic and copynumber variation to be used in association studies.  
Tags: Markov model, serial tempering, Gibbs sampling, Bayesian, Bioinformatics, Boost, C++, Genetics, bioinformatics, biostatistics, sampling  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130508 14:18 
Dependency modeling toolbox  Modelbased tools for the discovery and analysis of statistical dependencies between data sources.  
Tags: Bayesian, CCA, Exponential, Machine Learning, Machine learning, analytics, dependence, machine learning, marginal likelihood, multivariate, pCCA, robust statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20100408 11:22 
EBS  EBS is an R package for the Exact Bayesian Segmentation of profiles. Exploring the segmentation space, it computes posterior probabilities of quantities such as changepoint localization, and proposes an efficient criterion for the choice of K.  
Tags: Bayesian, Copynumber, Sequence analysis, break detection  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120529 15:59 
Ecological Inference eiwildpackage  The eiwildpackage calculates the ecological Inference problem with the multinomialdirichletmodel by rosen et al (2001) combined with individual level data (Wakefield,2004). It can estimate the inner cells of an RxCtable which is empty.  
Tags: ecological Inference, Bayes, mcmc, Bayesian, MCMC  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20131214 21:57 
Generalized iLUCKmodels  Interval/imprecise probability models allowing nonstochastic uncertainty in Bayesian analysis by defining sets of conjugate priors such that the set of posteriors, obtained by updating each prior in the set by Bayes' rule, is still easy to handle.  
Tags: Bayesian, Imprecise probability theory  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20100306 00:28 
Hyperg Priors for GAM selection  This Rpackage implements objective Bayesian model selection with penalised splines, using a socalled hyperg prior for the parameters in the generalised additive model.  
Tags: variable selection, objective Bayes, Bayesian, Classification, generalized linear models, marginal likelihood, model comparison, multiplicity, multivariate, semiparametric model, spline  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110811 09:12 
Imprecise Probability Estimates for GLIM  The Imprecise Probability Estimates for GLIM (IPEGLIM) is a collection of tools for conducting analysis of epistemic uncertainty in the generalized linear model setup using the Walley (1991)'s Imprecise Probability Theory.  
Tags: Imprecise probabilities, interval probabilities, geometry, Bayesian, inference  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120821 02:39 
MixCluster  MixCluster performs the cluster analysis of mixedtype data by using a mixture model of Gaussian copulas. Thus, the intraclass dependencies are modelized and the onedimensional margins of the components follow classical distributions.  
Tags: Bayesian, Clustering, Estimation, Gibbs sampling, Machine Learning, Machine learning, Mixture, Multivariate Analysis, PCA, Visualisation, Visualization, clustering, copula, data mining, density estimation, mixed model, mixture, mixture model, mixture modelling, model estimation  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140811 14:03 
Projections using Bayesian APC model  Package implementing Bayesian ageperiodcohort models with the focus on projections. BAPC generates agespecific and agestandardized projected rates and predictive distributions.  
Tags: Bayesian, Biostatistics, Cancer, RINLA, epidemiology, forecasting, prediction, projections  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150324 15:10 
R2MLwiN  R2MLwiN is an R command interface to the MLwiN multilevel modelling software package, allowing users to fit multilevel models using MLwiN from within the R environment.  
Tags: R, MLwiN, MCMC, IGLS, Bayesian, mixed model  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130210 13:19 
R2STATS: A GUI for GLM(M)  R2STATS is a gWidgetsRGtk2 GUI for fitting GLM and GLMM in R. It is intended to make model comparisons easy, for an arbitrary number of models. It also provide automatic plots for all models.  
Tags: ANOVA, Bayesian, GUI, Graphical User Interface, educational tool, generalized linear models, lme, mixed effect models, mixed model, model comparison, model estimation, model specification, statistical education  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110701 18:40 
35 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>