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ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

85 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
GenABEL - A suite of packages for statistical genomics
Tags: Bioinformatics, R, meta-analysis, microarray experiment, mixed model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-08-12 17:07

Gene set analysis with asymptotic pvalue - mGSZ is a gene set analysis method based on GSZ statistics (Törönen et al.,2009) and asymptotic p-value. mGSZ is different from the standard GSZ method in that it assigns asymptotic p-values to the gene set scores instead of empirical p-values.
Tags: Gene set analysis, Biostatistics, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-14 10:16

HTDA (High Throughput Data Analysis) - A generic platform for the analysis of high throughput transcriptomics, proteomics and metabolomics data.
Tags: Bioinformatics, Differential expression analysis, Multivariate Analysis, Next generation Sequencing, RNA-seq
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-06-28 11:59

HTSAnalysis - This project contains R packages for the statistical analysis of high throughput sequencing data.
Tags: Filter, RNA-seq, Differential expression analysis, Bioinformatics, Next generation Sequencing, gene expression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-10-16 20:41

Joint segmentation [MOVED TO GITHUB] - This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies.
Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-04 20:37

Layered and chained mixture models - Layered and chained mixture models for various univariate and multivariate distributions.
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Whole-genome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-10 07:45

LncDM(LncRNA Different methylation) - The Different Methylation Sites, Elements and Regions of lncRNA
Tags: DNA methylation, lncRNA, disease, Infinium HumanMethylation450, reannotation, R package, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-07-16 06:57

MEET.5.1:Motif Element Estimation Tools - MEET 5.1 is an R-package that includes a set of models, aprox. 550, and tools for the detection of cis-regulatory sequences.
Tags: Bioinformatics, Machine Learning, Sequence analysis, entropy, pattern recognition

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-08-10 14:27

MELON - Methylation Enriched LOci Normalization for genome-wide DNA methylation experiments
Tags: Normalization, Second-generation Sequencing, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-18 14:21

MPAgenomics - This package contains an implementation of the lars algorithm for the lasso and fusion penalization. It works even if the number of covariate is greater than the number of individuals.
Tags: lasso, lars, sparse linear model, C++, genomic, Bioinformatics, Multivariate Analysis, Multivariate Regression, high dimentional data, low sample size high dimensional data, penalized regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-04-18 16:20

Mixed-pair mutual information estimators - Fast calculation mutual information for comparisons between all types of variables including continuous vs continuous, continuous vs discrete and discrete vs discrete. Also provides jackknife bias correction and tests for association.
Tags: Bioinformatics, categorical, data mining, dependence, dissimilarity, entropy, gene expression, genetics, independence, microarray

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-08-10 08:48

Modified Gene Set Z-score - Modified Gene Set Z-score (mGSZ) is a gene set analysis method based on Gene Set Z-score and asymptotic p-values.
Tags: Bioinformatics, Biostatistics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-17 12:47

Multilocus Random Mixed Linear Model - Multilocus Random Mixed Linear Model for Genome-wide Association Study
Tags: Bioinformatics, Biostatistics, Genetics, MLM, R, SNP, Whole-genome, mixed model, multi-dimensions
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-02-25 14:46

NameNeedle - Using Needleman-Wunsch to Match Sample Names
Tags: Bioinformatics, DNA, bioinformatics, matching, optimal matching

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:21

New Algorithms for Boosting - In this project recently developed algorithms and variants of L2-Boosting will be implemented in R and provided as an package for other users.
Tags: Bioinformatics, Economics, Machine Learning, Prediction, Statistics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-05-27 06:14

OOMPA - OOMPA is a suite of R packages for the analysis of gene expression (RNA), proteomics profiling , and other high throughput molecular biology data. OOMPA uses S4 classes to construct object-oriented tools with a consistent user interface.
Tags: Bioinformatics, Clustering, Differential expression analysis, Gene expression, Multiple Comparisons, Multivariate Analysis, bioinformatics, clustering, false discovery rate, gene expression, high dimentional data, microarray, multivariate, permutation tests

Activity Percentile: 71
Activity Ranking: 13
Registered: 2013-08-29 17:48

Patchwork - Allele-specific Copy-number analysis for whole-genome sequenced data in CompleteGenomics or BAM format.
Tags: Copynumber, Whole-genome, Cancer, R, Visualization, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-31 13:53

Priority Index - Priority Index or PI accelerates target selection through networking genetic evidence.
Tags: Bioinformatics, Biostatistics, genetics, genomics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-04-21 23:06

Probabilistic Index Models - Developing an R-package for a new class of regression models: Probabilistic Index Models.
Tags: Probabilistic Index Models, regression, modeling, nonparametric, semiparametric, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Multiple Comparisons, Regression, biostatistics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-06-09 14:01

ProbeAnnotator - Simple and efficient functions for the annotation of genomic platforms (e.g. Illumina, Affymetrix) using SAM alignment files or chromosomal location.
Tags: Platform Annotation, Probe Annotation, Bioinformatics, Bioinformatics & Biostatistics, C++, Genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-07-29 13:16

85 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
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