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85 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
QSAR metrics - Implementation of the classical metrics for QSAR like Q2 and R2 pred (Q2 external) and set of novel rm2 metrics to be applied in differentiating the “good” (predictive) models from the “bad” (low predictive).
Tags: Bioinformatics, Chemoinformatics, Multivariate Analysis, Multivariate Regression
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-24 18:15

Quantify RNA-Seq data - The package can read alignment BAM file from RNA-seq and gene annotation from genomic databases directly to quantify the gene abundances in different levels.
Tags: Next generation Sequencing, Bioinformatics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-05-09 18:25

QuasiAlign: Efficient Sequence Analysis - Implementations position sensitive p-mer frequency clustering, and efficient alignment-free method to compare, match and analyze large scale genetic sequences.
Tags: Sequence analysis, sequence alignment, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2009-10-12 02:27

RHRV - Package for carring out heart rate variability studies of ECG records
Tags: Heart Rate Variability, Heart, Medical Informatics, Bioinformatics, Medical Science

Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-10-14 10:22

RPPanalyzer - Exploratory analysis of data generated on the Reverse Phase Protein Array (RPPA) platform. Includes import and export, quality checking, visualisation and clustering analyses.
Tags: Bioinformatics, proteomics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-09-25 16:18

SHARPR2 - SHARPR2 for HiDRA
Tags: Bioinformatics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2017-09-09 21:50

Sparse group lasso [MOVED TO GITHUB] - Algorithms for solving sparse group lasso optimization problems. [MOVED TO GITHUB] https://github.com/vincent-dk
Tags: sparse group lasso, group lasso, lasso, Bioinformatics, Biostatistics, Classification, Machine Learning, Multivariate Analysis, Multivariate Regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-02-28 13:48

Species Distribution Modelling - sdm is an extendable framework to develop species distributions models using individual and community-based approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time.
Tags: Bioinformatics, Biostatistics, Ecology, Machine Learning, animal, community ecology, ensemble forecasting, raster, spatial, spatial data, spatial methods, species distribution models, species distributions

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-26 16:09

Species identity and evolution in R - A suite of tools for investigating the evolution, variation and identification of species. Includes functions for DNA barcoding, and sliding window analyses.
Tags: Bioinformatics, Genetic Algorithms, clustering, diversity, ordination, phylogeny, sequence analysis, species accumulation, taxonomic diversity, tree, visualization

Activity Percentile: 0
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Registered: 2011-04-15 00:09

SplicingTypesAnno - SplicingTypesAnno is a user-friendly R package, extracting, annotating and analyzing alternative splicing types at exon/intron level for sequence alignment files from RNA-Seq.
Tags: Bioinformatics, Second-generation Sequencing
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-09-18 12:24

SuperCurve - SuperCurve is a set of packages to analyze reverse phase protein (lysate) arrays (RPPA), which is being used to analyze data as part of The Cancer Genome Atlas.
Tags: Bioinformatics, bioinformatics, proteomics, reverse phase lysate array, RPPA
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-05-08 13:21

Testing HWE for Multiallelic Genes - This package calculates plain and fully conditional P-values for the root-mean-square statistic, chi-square statistic, and log likelihood-ratio statistic for the user-provided genotype counts to be consistent with the Hardy-Weinberg equilibrium model.
Tags: Bioinformatics, R, R-Forge, biostatistics, likelihood, model comparison

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-07-03 03:50

UMPIRE - UMPIRE provides tools to simulate realistic biological expression data. It includes additive and multiplicative noise, correlated expression, inactive genes, and a link to outcome data that incorporates the multi-hit cancer model.
Tags: Bioinformatics, Cancer, Gene expression, bioinformatics, gene expression, simulation, simulations, synthetic dataset

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-03 16:37

Uncertainty Analysis for SDMs - usdm is a framework to assess the impact of different sources of uncertainties (e.g. positional uncertainty) on performance of species distribution models (SDMs).
Tags: Bioinformatics, Ecology, raster, spatial, spatial autocorrelation, spatial data, spatial methods, species distribution models

Activity Percentile: 0
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Registered: 2012-09-17 00:05

UniMult - The package includes three main functions univar_analysis, univar_plots, multvar_analyis which make up the main generic function univar_mult. This function calls the univariate analysis results, plots and multivariate analysis results.
Tags: Bioinformatics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-01-15 20:26

Virpack: A Viral Metagenomic Pipeline - This package contains a full viral metagenomic processing pipeline. The package includes steps for filtering, assembly, annotation, and abundance estimation.
Tags: Viral, Metagenomic, Assembly, Abundance, Annotation, Bioinformatics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
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Registered: 2015-10-06 15:35

WaveSeqR - Public repository of R-package WaveSeqR which implements the ChIP-Seq analysis algorithm WaveSeq DOI: 10.1371/journal.pone.0045486.
Tags: chipseq, peakcalling, Bioinformatics, Next generation Sequencing, biostatistics, wavelet

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-11-21 21:46

XGR - eXploring Genomic Relations (XGR) at the gene and SNP level through enrichment analysis, similarity analysis and network analysis
Tags: Bioinformatics, Genetics, Ontology, Networks, Similarity, SNP

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-04-01 13:46

Y-Randomization - Implementation of y-randomization (also called y- scrambling or response randomization), a method said to be “probably the most powerful validation procedure”
Tags: Bioinformatics, Chemoinformatics, Multivariate Regression, RStudio
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-24 18:19

cRacker - cRacker automates standard normalization strategies of quantitative proteomic experiments. It simplifies the analysis of quantified peptide lists coming from various proteomic quantitation softwares.
Tags: proteomics, Bioinformatics, Clustering, Normalization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-07-12 22:01

85 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
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