Software Map

Tag cloud | Project Tree | Project List


ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R R-Forge Rcmdr Regression SNP Statistics Time series Visualization Whole-genome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics non-parametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatio-temporal species distribution models survival teaching text mining time series visualization

85 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
Tags: C++, Genetics, mixed model, openmp, parallel computing, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Gibbs sampling, Regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-29 18:34

cvrcalc - A Cardiovascular Risk's Calculator by Scores
Tags: cardiovascular, risk, score, framingham, dorica, regicor, Bioinformatics, Graphical User Interface, Medical Science, epidemiology

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-08-02 12:18

data management R Tools - The "dmRTools" package is collection of functions can be used in a clinical trials data management system.
Tags: Medical Science, Visualization, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-10-10 21:38

dcGOR - dcGOR is a package for analysing domain-centric ontologies and annotations. It includes: enrichment analysis and visualisation; construction of a domain (semantic similarity) network; significance analysis for a contact network.
Tags: Bioinformatics, Ontology, Annotation, Enrichment analysis, Visualisation, Prediction, Ancestral reconstruction

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-10-23 15:21

dnet - dnet is an open-source R package for integrative analysis of digitised data in terms of network, ontology and evolution, including: identification and visualisation of gene-active dynamic subnetworks; random walk with restart; and enrichment analysis
Tags: Bioinformatics, Network, Expression, Ontology, Evolution, Enrichment analysis, Visualisation

Activity Percentile: 22
Activity Ranking: 33
Registered: 2014-01-22 14:22

forestFloor - stable: http://cran.r-project.org/web/packages/forestFloor/index.html dev: https://github.com/sorhawell/forestFloor forestFloor is a package to visualize random forest
Tags: C++, Regression, Bioinformatics, Chemoinformatics, FNN, Machine Learning, Rcpp, classification, cross-validation, data mining, k-NN, nonlinear models, random forest
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-01-01 21:32

genoPlotR - plot gene and genome maps - genoPlotR is a R package to produce reproducible, publication-grade graphics of gene and genome maps. It allows the user to read from usual format such as protein table files and blast results, as well as home-made tabular files.
Tags: gene maps, genomics, Bioinformatics, DNA, Visualization, Whole-genome

Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-01-08 16:59

missForest - The missForest package enables the user to perform straightforward missing value imputation on basically any kind of data. Additionally, the algorithm supplies the user with an out-of-bag imputation error estimate.
Tags: imputation, random forest, missing, missing data, missing values, missingness, out-of-bag, Bioinformatics, Classification, Multivariate Regression, Multivariate Techniques, R

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-05-18 08:28

mixOmics - mixOmics is an R package that supplies different methodologies to unravel relationships between two heterogeneous data sets of size n × p and n × q where the p and q variables are measured on the same samples or individuals n.
Tags: Bioinformatics, CCA, Multivariate Regression, microarray experiment

Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-06-25 04:17

netbenchmark - The development version of netbenchmark package, which implements a benchmarking of several gene network inference algorithms from gene expression data.
Tags: Gene expression, R, RStudio, Rcpp, benchmark, gene expression, gene networks, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-11-28 09:55

netmes - Netmes is an R software package that allows assessing the Gene Regulatory Network Inference (GRNI) algorithms in detail by using several local and global network-based error measures in combination with an ensemble approach.
Tags: ensemble performance, network-based error measures, bioinformatics, biostatistics, gene networks, Bioinformatics, genetic interaction

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-07-26 14:26

olea - olea provides functions for objectively testing for over-or underrepresentation of tip states in phylogenetic trees. The package also provides some basic tree traversal functions.
Tags: Bioinformatics, community ecology, phylogeny
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-04-12 20:51

opm and opmdata - Analysing phenotype microarrays and growth curves: plots, curve parameters, discretization, metadata, simultaneous tests, pathways, genome annotation, feature selection, textual reports, YAML, database I/O; see also opm.dsmz.de and www.goeker.org/opm
Tags: Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-01-17 23:06

pathview - Pathview is a novel tool set in for pathway based data integration and visualization. It downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway, and renders pathway graph with the mapped data.
Tags: Bioinformatics, Visualization, gene expression, microarray
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-03-07 22:20

penalizedSVM - Feature selection for SVM classification in high dimensions using penalty functions L1, SCAD, Elastic Net (L1+L2) and Elastic SCAD (SCAD+L2) SVM. Choice of data-dependent tuning parameters: beside the standard fixed grid an interval search is implemented
Tags: Classification, feature selection, machine learning, tuning parameters, penalty functions, high dimentional data, low sample size high dimensional data, Bioinformatics, Machine Learning
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-06-19 15:40

phangorn - phangorn: Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)
Tags: Bioinformatics, Phylogeny
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-10-09 16:14

plantbreeding - plantbreeding: R Software package for analysis and visualization of data from plant breeding and genetics experiments.
Tags: Plant Breeding, Genetics, Plant Genomics, R, biostatistics, graphics, Bioinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-07-01 21:32

polyploid - We provide tools for polyploid data, covering topics from genotype calling, over linkage mapping to haplotyping. Further we allow users to simulate own data sets for given genotypes and population structures.
Tags: Bioinformatics, Genetics, Plant Breeding, Plant Genomics, SNP, bioinformatics, heuristics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-02-05 10:27

qsaR in R - This project aims at building a flexible framework for working with QSAR in R.
Tags: Bioinformatics, Chemoinformatics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-10-22 23:24

rbamtools - R-package for reading and writing BAM files based on samtools library by Heng Li.
Tags: BAM files, Alignment, Bioinformatics, Second-generation Sequencing
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-07-04 15:55

85 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2> <3> <4> <5>
Thanks to:
Vienna University of Economics and Business University of Wisconsin - Madison Powered By FusionForge