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14 projects in result set.
Classification of RNA Structure Change - R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.
Tags: RNA, SHAPE, Bioinformatics & Biostatistics, Classification, machine learning

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-09-02 17:28

EBI Metagenomics - An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/
Tags: Abundance, Bioinformatics, Bioinformatics & Biostatistics, Count estimates, Ecological monitoring, Ecology, Environmental monitoring, Metagenomic, biodiversity, biodiversity estimation, bioenv, community ecology, diversity, species accumulation, species distributions

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-10-08 19:20

Eagle for Genome-Wide Association Mappin - The Eagle package is an implementation of multiple-locus association mapping on a genome-wide scale. It can handle inbred or outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer.
Tags: Bioinformatics & Biostatistics

Activity Percentile: 10
Activity Ranking: 39
Registered: 2017-07-24 00:36

NCCT-R - A package to be used in the analysis of ToxCast chemical screening data.
Tags: R, database, dbi, Bioinformatics & Biostatistics, HTS
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-06-26 02:19

NWFSC assessment code - Fishery stock assessment tools used at the Northwest Fishery Science Center (NWFSC) of NOAA. Code for the analysis of survey and fishery data.
Tags: fishery survey, NWFSC, Bioinformatics & Biostatistics, Biostatistics, Ecology, Fisheries

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-01-04 22:44

Polyphase - This method accepts the genotype data, the relative physical position of the markers for species of any ploidy and returns the phased output.
Tags: Bioinformatics & Biostatistics, Boost, C++, Plant Breeding, Plant Genomics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-02-18 15:57

Probabilistic Index Models - Developing an R-package for a new class of regression models: Probabilistic Index Models.
Tags: Probabilistic Index Models, regression, modeling, nonparametric, semiparametric, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Multiple Comparisons, Regression, biostatistics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-06-09 14:01

ProbeAnnotator - Simple and efficient functions for the annotation of genomic platforms (e.g. Illumina, Affymetrix) using SAM alignment files or chromosomal location.
Tags: Platform Annotation, Probe Annotation, Bioinformatics, Bioinformatics & Biostatistics, C++, Genetics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2014-07-29 13:16

REIDS - The REIDS package is built around the Random Effects for the Identification of Differntial Splicing, a linear mixed model for the identification of alternatively spliced exons. The model is applicable to exon and HTA array data.
Tags: Bioinformatics & Biostatistics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-10-18 19:38

TopKLists - The package includes tools for inference, aggregation, and visualization of multiple ranked lists. Consolidated information from two or more such lists comprising the same set of objects can be obtained. Incomplete rankings and partial lists are allowed.
Tags: Statistics, Bioinformatics & Biostatistics, Web Analytics and Business Intelligence

Activity Percentile: 0
Activity Ranking: 0
Registered: 2010-05-06 10:59

cgen - Parallel Genomic Prediction and GWAS in R using Eigen and Rcpp
Tags: C++, Genetics, mixed model, openmp, parallel computing, Bioinformatics, Bioinformatics & Biostatistics, Biostatistics, Gibbs sampling, Regression

Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-05-29 18:34

geneNetBP - The geneNetBP package implements methods to predict, quantify and visualize system-wide changes in beliefs after absorbing evidence in genotype-phenotype networks inferred from eQTL data.
Tags: Bayesian network, Bioinformatics & Biostatistics, Causal effects, Gene Expression, R, Visualization

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-11-16 19:01

ridgeAdap - ridgeAdap is an R package to use the adaptive ridge regression to perform statistical test for the lasso and variant estimators.
Tags: Bioinformatics & Biostatistics
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-04-02 20:05

sonicLength - sonicLength estimates the abundances of cells marked with integrated DNA using DNA fragment length data. Also included are tools for random number generation apropos to fragment lengths, simulating datasets, and jackknifing multiple replicates
Tags: Bioinformatics & Biostatistics, EM, genomics

Activity Percentile: 0
Activity Ranking: 0
Registered: 2011-09-14 03:27

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