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4 projects in result set.
Breakpoint detection error - Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection

Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-11-27 16:51

Piet - This package provides some segmentation tools, using fused lasso, group fused lasso and generalized fused lasso (GFL), for analysis of individual or multiple sequences of CNV data.
Tags: Copy number variant, CNV, fused lasso, group fused lasso, MM algorithm
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2012-03-12 12:11

SegAnnot - SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.
Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation

Activity Percentile: 3
Activity Ranking: 40
Registered: 2012-11-27 16:58

plumbCNV: [see github: nicholasjcooper] - It has been shown that a comprehensive quality control battery for Log-R-Ratio intensity data is needed to reduce the high false positive rate for rare CNV detection [Shtir et al, 2013]. PlumbCNV is an R package that automates this QC pipeline.
Tags: CNV, CNP, SNP, QC, plumbCNV, PCA, bigmemory, bigalgebra, plink, penncnv, R, Copy number variant, microarray, illumina, affy
This project has not yet categorized itself in the Trove Software Map


Activity Percentile: 0
Activity Ranking: 0
Registered: 2013-02-07 14:22

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