Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting political analysis prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models survival teaching text mining time series visualization
9 projects in result set.
Benchmarking genomic data integration  Comparison pipeline for multiplatform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations  
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, RForge, Wholegenome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110202 00:51 
Breakpoint detection error  Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.  
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:51 
EBS  EBS is an R package for the Exact Bayesian Segmentation of profiles. Exploring the segmentation space, it computes posterior probabilities of quantities such as changepoint localization, and proposes an efficient criterion for the choice of K.  
Tags: Bayesian, Copynumber, Sequence analysis, break detection  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120529 15:59 
Fast kernel changepoint procedure  This package implements the Kernseg procedure described in the paper "New efficient algorithms for multiple changepoint detection with kernels (A. Celisse, G. Marot, M. PierreJean, G. Rigaill) available at https://arxiv.org/abs/1710.04556  
Tags: reproducing kernel, Bioinformatics & Biostatistics, Biostatistics, CNV, Copy number variant, Copynumber, Statistics, Time series, bioinformatics, biostatistics, break detection, breakpoint, change detection, change point, changepoint, dynamic programming, machine learning, model selection, multivariate analysis, multivariate statistics, nonparametric, segmentation, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 18 Activity Ranking: 34 Registered: 20171218 14:11 
Joint segmentation [MOVED TO GITHUB]  This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies.  
Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130104 20:37 
Parentspecific DNA copy numbers (abo)  Paired PSCBS: Parentspecific copy number in paired tumornormal studies using circular binary segmentation (CBS). Packages in this project: PSCBS.  
Tags: Cancer, Copynumber, DNA, Genetics, QC, SNP, bioinformatics, segmentation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20091020 01:21 
Patchwork  Allelespecific Copynumber analysis for wholegenome sequenced data in CompleteGenomics or BAM format.  
Tags: Copynumber, Wholegenome, Cancer, R, Visualization, Bioinformatics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20111031 13:53 
SegAnnot  SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.  
Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:58 
Segmentor3IsBack  Segmentor3IsBack is an R package for the optimal and fast segmentation of datasets with respect to the loglikelihood loss. The main code has been developed in C++ in a versatile manner, and embeded in an R package.  
Tags: Copynumber, Sequence analysis, break detection, change detection, likelihood, optimization  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120524 16:38 