Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
36 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>
BioCro  Functions and data for plant and crop modeling. Simulates C4 photosynthesis, biomass production and estimates parameters for plant phyisiological models using optimization techinques and Markov chains.  
Tags: agriculture, ecological models, ecology, model, Ecology  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140918 13:21 
BioMod  BIOMOD is a computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of speciesenvironment relationships.  
Tags: Ecological niche modeling, species distribution models, ensemble forecasting, ecology, Ecology, model estimation, weighted averages  

Activity Percentile: 42 Activity Ranking: 19 Registered: 20081113 08:31 
Coalescent for compartmental models  This package provides methods to compute the likelihood of a gene genealogy using coalescent models for populations with complex demographic histories.  
Tags: population genetics, epidemiology, infectious disease, Bioinformatics, Ecology, Genetics, Phylogeny  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130109 23:07 
CommEcol  Analyses in Community Ecology  CommEcol  Data Analyses in Community Ecology  
Tags: Ecology, beta diversity, community ecology, community null model, dissimilarity, distance, diversity, diversity partioninig, ecology, environmetrics, functional diversity, nestedness, phylogeny  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130425 23:41 
DeadCanMove  Locating roadkill hotspots is key to mitigate road impacts on wildlife, but study design can affect hotspot definition. The DeadCanMove R package contains functions to estimate how sampling scheme may affect the spatial accuracy of hotspot identification.  
Tags: Ecology, R, animal, comparison, ecology  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140401 18:15 
Downscaling species occupancy  A set of functions that downscale species occupancy from coarse grain sizes to predict species occupancy at finer grain sizes  
Tags: Ecology, ecological models, ecology, spatial  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150127 10:48 
EBI Metagenomics  An R package for working with data from the EBI Metagenomics Portal: https://www.ebi.ac.uk/metagenomics/  
Tags: Abundance, Bioinformatics, Bioinformatics & Biostatistics, Count estimates, Ecological monitoring, Ecology, Environmental monitoring, Metagenomic, biodiversity, biodiversity estimation, bioenv, community ecology, diversity, species accumulation, species distributions  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20161008 19:20 
G2Sd  G2Sd (Grainsize Statistics and Description of Sediment) gives full descriptive statistics and a physical description of sediment obtained with metric or phi sieves according to the grain size distribution  
Tags: folkward statistics, sediment, grainsize distribution, texture, sedimentology, Ecology  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140414 07:27 
GUTS  GUTS (General Unified Threshold model of Survival) is a stochastic survival model for ecotoxicology. GUTS allows for the fast calculation of the survival probabilities and the logarithm of the corresponding likelihood.  
Tags: Ecology, Toxicology, ecology  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 6 Activity Ranking: 30 Registered: 20120502 12:37 
Hierarchical RandomForest  An R package that runs randomForest as a local classifier at each parent node of a predefined treelike class hierarchy.  
Tags: Class Hierarchy, habitat, landcover, landuse, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, outofbag, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150115 14:20 
Home Range Tools  A series of function to automate batch home range processing using adehabitatHR package.  
Tags: Ecology, home range, spatial, spatial data, spatial methods, spatial point patterns, tracking data  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121119 12:16 
MODISTools  MODISTools uses the MODIS SOAP Web Service provided by ORNL DAAC for remote retrieval and processing of large subsets of data  as a batch process  from NASAs online archive of remotelysensed data from the MODIS satellites.  
Tags: Ecology, data mining, remote sensing  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120809 23:53 
Movement Analysis  Analysis of trajectory data. Compute home ranges, speed distributions and detect movement patterns based on the Brownian bridge movement model.  
Tags: Ecology, brownian bridge, ecological models, movement, spatial data, spatiotemporal, trajectory  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150409 16:55 
Movement Modeling Using CTMCs  The ctmcMove package facilitates modeling animal movement within a continuoustime discretespace Markov chain (CTMC) framework.  
Tags: Ecology, ecology, movement  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20151013 10:29 
NWFSC assessment code  Fishery stock assessment tools used at the Northwest Fishery Science Center (NWFSC) of NOAA. Code for the analysis of survey and fishery data.  
Tags: fishery survey, NWFSC, Bioinformatics & Biostatistics, Biostatistics, Ecology, Fisheries  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120104 22:44 
NullSens  Partitioning Abiotic and Biotic Contributions to Community Variation  
Tags: Ecology, Multivariate Analysis, Multivariate Regression, bioinformatics, community ecology, community null model, ecological Inference, ecological models, ecology, linear models, model estimation, model performance, molecular ecology, multivariate regression, nonparametric, null model, parametric model, permutation tests, prediction, regression, robust statistics, simulations, spatial regression, spatiotemporal statistics, species abundance model, species distributions, statistical inference, variance partitioning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20140505 19:49 
ODE Solvers Compiled OnDemand  The odeintr package generates compiled ODE solvers ondemand. It uses the Boost odeint library and Rcpp.  
Tags: C++, Ecology, Economics, Fast, Fisheries, Forestry, HPC, ODE, R, Rcpp, dynamic systems, ecological models, ordinary differential equations, simulation, solver  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150506 21:14 
RNetLogo (Discontinued)  RNetLogo is an interface to the agentbased modelling plattform NetLogo. NL can be embedded into the R environment with headless (no GUI) and interactive GUI mode. It provides functions to load models, execute commands and to get values from reporters.  
Tags: agentbased Model, Animal, Artificial Neural Network, Ecology, Economics, Fisheries, R, dynamic systems, individualbased models, individualbasedmodel, political analysis, population dynamics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110819 15:59 
SURDES  A method for selecting sampling points in a given territory using an environmental distance site allocation criterion which minimises the variation uncovered by the selected sites between all available locations using a pmedian procedure.  
Tags: survey design, environmental distance matrix, Ecology  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20100305 16:39 
SoilR  We have moved to https://github.com/MPIBGCTEE/SoilRexp This repository is not maintained any more  
Tags: Ecology, ODE, dynamic systems, ecological models, ecology, simulation, soil  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120117 15:38 
36 projects in result set. Displaying 20 projects per page. Projects sorted by alphabetical order.
<1> <2>