Software Map
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6 projects in result set.
Bayesian Model for Rare Variant analysis  BMRV is an R package that can be readily applied to rare variant (RV) association analysis for various traits (continuous, binary and ordinal), designs (independent, family and twin) and genotype data (sequence and imputated).  
Tags: Bayesian, Biostatistics, Genetics, Gibbs sampling, Sequence analysis, genetic interaction, genetics, linear models, mixed effect models  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20151211 21:50 
EBS  EBS is an R package for the Exact Bayesian Segmentation of profiles. Exploring the segmentation space, it computes posterior probabilities of quantities such as changepoint localization, and proposes an efficient criterion for the choice of K.  
Tags: Bayesian, Copynumber, Sequence analysis, break detection  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120529 15:59 
MEET.5.1:Motif Element Estimation Tools  MEET 5.1 is an Rpackage that includes a set of models, aprox. 550, and tools for the detection of cisregulatory sequences.  
Tags: Bioinformatics, Machine Learning, Sequence analysis, entropy, pattern recognition  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110810 14:27 
QuasiAlign: Efficient Sequence Analysis  Implementations position sensitive pmer frequency clustering, and efficient alignmentfree method to compare, match and analyze large scale genetic sequences.  
Tags: Sequence analysis, sequence alignment, Bioinformatics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20091012 02:27 
Segmentor3IsBack  Segmentor3IsBack is an R package for the optimal and fast segmentation of datasets with respect to the loglikelihood loss. The main code has been developed in C++ in a versatile manner, and embeded in an R package.  
Tags: Copynumber, Sequence analysis, break detection, change detection, likelihood, optimization  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120524 16:38 
species delimitation in oysters  The aim of this project is to make clear oyster phylogeny and systematics using both the MrBayes and the BEAST/GMYC analyses based on multigene sequence data.  
Tags: Bayesian, Animal, Classification, Sequence analysis, Phylogeny, Tree  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120502 12:23 