Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
12 projects in result set.
Analysis of Count Time Series  R package which provides likelihoodbased methods for model fitting and assessment, prediction and intervention analysis of count time series following generalized linear models.  
Tags: time series, autocorrelation, break detection, change detection, regression, count data  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130404 13:48 
Breakpoint detection error  Functions for calculating the breakpoint detection error, which can be used for segmentation model selection.  
Tags: Bioinformatics, Copy number variant, Copynumber, break detection, change detection  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:51 
Breaks For Additive Season and Trend  BFAST, Breaks For Additive Season and Trend, integrates the decomposition of time series into trend, season, and remainder components with methods for detecting and characterizing change within time series.  
Tags: break detection, tipping points, trend analysis  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090914 03:28 
EBS  EBS is an R package for the Exact Bayesian Segmentation of profiles. Exploring the segmentation space, it computes posterior probabilities of quantities such as changepoint localization, and proposes an efficient criterion for the choice of K.  
Tags: Bayesian, Copynumber, Sequence analysis, break detection  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120529 15:59 
Fast kernel changepoint procedure  This package implements the Kernseg procedure described in the paper "New efficient algorithms for multiple changepoint detection with kernels (A. Celisse, G. Marot, M. PierreJean, G. Rigaill) available at https://arxiv.org/abs/1710.04556  
Tags: reproducing kernel, Bioinformatics & Biostatistics, Biostatistics, CNV, Copy number variant, Copynumber, Statistics, Time series, bioinformatics, biostatistics, break detection, breakpoint, change detection, change point, changepoint, dynamic programming, machine learning, model selection, multivariate analysis, multivariate statistics, nonparametric, segmentation, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20171218 14:11 
Joint segmentation [MOVED TO GITHUB]  This package implements functions to quickly segment multivariate signals into piecewise constant profiles. Typical application: joint segmentation of DNA copy number signals obtained from Single Nucleotide Polymorphism microarrays in cancer studies.  
Tags: Bioinformatics, CNV, Cancer, Copynumber, biostatistics, break detection, high dimentional data  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130104 20:37 
RASTA  The RASTA package provides chapters, demo’s, tutorials and datasets to demonstrate the importance of using a scripting language for Reproducible and Applied Spatial and Temporal Analysis (RASTA).  
Tags: break detection, raster, spatial, spatial classes, spatial data, spatial methods, spatial operators, tipping points  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130821 12:32 
SegAnnot  SegAnnot calculates the least squares segmentation for piecewise constant annotated noisy signals.  
Tags: Copy number variant, Copynumber, break detection, change detection, optimization, segmentation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20121127 16:58 
Segmentor3IsBack  Segmentor3IsBack is an R package for the optimal and fast segmentation of datasets with respect to the loglikelihood loss. The main code has been developed in C++ in a versatile manner, and embeded in an R package.  
Tags: Copynumber, Sequence analysis, break detection, change detection, likelihood, optimization  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120524 16:38 
greenbrown  greenbrown is a collection of functions to analyse trends, trend changes and phenology in gridded time series like from satellite observations or climate model simulations.  
Tags: break detection, remote sensing, tipping points, trend analysis, phenology, spatiotemporal  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130227 17:37 
lm.br  Exact significance tests for a changepoint in linear or multiple linear regression. Confidence intervals and confidence regions with exact coverage probabilities for the changepoint.  
Tags: changepoint, breakpoint, brokenline regression, change detection, linear models, nonlinear models, regression, structural break, thresholds, break detection, Regression, Multivariate Regression, multivariate, multivariate regression, multiple regression, Multivariate Analysis  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130225 20:29 
surveillance  The Rpackage 'surveillance' is a framework for the development of statistical methods for the modeling and changepoint detection in time series of counts, proportions and categorical data as well as continuoustime epidemic like point process phenomena.  
Tags: Ecology, autocorrelation, biostatistics, break detection, categorical, change detection, disease mapping, dynamic systems, ecology, event histories, model specification, regression, spatial, spatial data, spatial methods, spatiotemporal, spatiotemporal point patterns  

Activity Percentile: 94 Activity Ranking: 3 Registered: 20070619 14:46 