Software Map
Tag cloud  Project Tree  Project List
ANOVA Bayesian Bioinformatics Bioinformatics & Biostatistics Biostatistics C++ Cancer Chemoinformatics Classification Clustering Copynumber DNA Ecology Economics Finance GUI Genetic Algorithms Genetics HTML Machine Learning Machine learning Mixture Multiple Comparisons Multivariate Analysis Multivariate Regression Multivariate Techniques Next generation Sequencing ODE Phylogeny R RForge Rcmdr Regression SNP Statistics Time series Visualization Wholegenome bioinformatics biostatistics break detection categorical change detection classification clustering community ecology data mining database datasets dissimilarity distance distributions diversity dynamic systems ecological models ecology econometrics economics epidemiology finance gene expression generalized linear models genetics graphics high dimentional data likelihood linear models linear programming machine learning microarray missing data missing values mixed effect models mixed model model comparison model estimation model selection movement multivariate multivariate regression multivariate statistics nonparametrics nonlinear models nonparametric optimization parametric model permutation tests phylogeny plotting prediction psychology raster regression remote sensing reporting robust robust statistics simulation soil spatial spatial autocorrelation spatial classes spatial data spatial methods spatial point patterns spatial regression spatiotemporal species distribution models stochastic processes survival teaching text mining time series visualization
17 projects in result set.
Applied Predictive Modeling  The package is an R companion to the Springer book "Applied Predictive Modeling". It contains several functions and data sets used in the text, as well as R scripts to recreate the analyses in each chapter.  
Tags: Classification, Machine Learning, Machine learning, Regression, classification, machine learning, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20130208 18:59 
Benchmarking genomic data integration  Comparison pipeline for multiplatform data integration algorithms for functional genomics studies. Provides tools to compare performance between publicly available implementations  
Tags: Bioinformatics, CCA, Cancer, Copynumber, Machine Learning, Machine learning, Multivariate Regression, Normalization, R, RForge, Wholegenome, analytics, biostatistics, comparative analysis, comparison, data mining, dependence, gene expression, machine learning, microarray, multivariate  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110202 00:51 
Chain graph models in R  Software for fitting (block recursive) chain graphs in R.  
Tags: Graphical model, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, Variables Selection, data mining, machine learning, markov, model estimation, multivariate, multivariate regression, multivariate statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150626 07:16 
Class Prediction  A suite of packages that can bu used for "class prediction" problems. Includes tools to standardize trainingtesting regimens and crossvalidation schemes.  
Tags: Bioinformatics, Gene expression, Genetic Algorithms, Machine Learning, Machine learning, Multivariate Regression, SelfOrganizing Map, bioinformatics, classification, crossvalidation, gene expression, genetic algorithms, machine learning, model, prediction, validation  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20140203 16:15 
Classification of RNA Structure Change  R package for the autonomous detection and classification of RNA structure change (riboSNitches) in chemical mapping data.  
Tags: RNA, SHAPE, Bioinformatics & Biostatistics, Classification, machine learning  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20150902 17:28 
Dependency modeling toolbox  Modelbased tools for the discovery and analysis of statistical dependencies between data sources.  
Tags: Bayesian, CCA, Exponential, Machine Learning, Machine learning, analytics, dependence, machine learning, marginal likelihood, multivariate, pCCA, robust statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20100408 11:22 
Fast kernel changepoint procedure  This package implements the Kernseg procedure described in the paper "New efficient algorithms for multiple changepoint detection with kernels (A. Celisse, G. Marot, M. PierreJean, G. Rigaill) available at https://arxiv.org/abs/1710.04556  
Tags: reproducing kernel, Bioinformatics & Biostatistics, Biostatistics, CNV, Copy number variant, Copynumber, Statistics, Time series, bioinformatics, biostatistics, break detection, breakpoint, change detection, change point, changepoint, dynamic programming, machine learning, model selection, multivariate analysis, multivariate statistics, nonparametric, segmentation, time series  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20171218 14:11 
Hierarchical RandomForest  An R package that runs randomForest as a local classifier at each parent node of a predefined treelike class hierarchy.  
Tags: Class Hierarchy, habitat, landcover, landuse, hierarchical, Classification, Ecology, Machine Learning, Machine learning, accuracy, bioinformatics, biostatistics, classification, ecological models, ecology, machine learning, outofbag, random forest  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150115 14:20 
Layered and chained mixture models  Layered and chained mixture models for various univariate and multivariate distributions.  
Tags: Bioinformatics, Classification, Clustering, Fuzzy Sets, Graphical model, Machine Learning, Machine learning, Multivariate Analysis, Multivariate Techniques, Wholegenome, classification, clustering, copula, machine learning, mixed model, multivariate statistics, parametric model, mixture model  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20110510 07:45 
RuleBased Models  This project contains GPL versions of Quinlan's C5.0 and Cubist models.  
Tags: Classification, Machine Learning, boosting, classification, machine learning, pattern recognition, rule induction, tree  
Activity Percentile: 0 Activity Ranking: 0 Registered: 20110225 15:11 
Subgroup Discovery and Analytics  The rsubgroup package provides algorithms and tools for subgroup discovery and analytics for the free R environment. The package integrates an interface to the org.vikamine.kernel library of the VIKAMINE system (http://www.vikamine.org).  
Tags: subgroup discovery, pattern mining, analytics, data mining, machine learning  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20120504 15:02 
The DataRobot R package  The DataRobot R package is an API for the DataRobot modeling engine, which fits a large, diverse collection of prediction models to a dataset. This API allows the user to build models, retrieve key characteristics, and generate predictions from new data.  
Tags: API, DataRobot, R, machine learning, modeling, prediction, regression  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20150526 15:13 
pcurve: principal curves  Package pcurve fits principal curves in high dimensions. It can be thought of as a nonlinear form of PCA. pcurve is an R port of Glenn De'aths pcurve library for SPlus.  
Tags: principal curves, ordination, Ecology, Machine Learning, Multivariate Analysis, Multivariate Regression, Multivariate Techniques, community ecology, constrained ordination, ecological models, ecology, environmetrics, machine learning, multivariate, multivariate regression, multivariate smoothing, multivariate statistics  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20130530 16:42 
penalizedSVM  Feature selection for SVM classification in high dimensions using penalty functions L1, SCAD, Elastic Net (L1+L2) and Elastic SCAD (SCAD+L2) SVM. Choice of datadependent tuning parameters: beside the standard fixed grid an interval search is implemented  
Tags: Classification, feature selection, machine learning, tuning parameters, penalty functions, high dimentional data, low sample size high dimensional data, Bioinformatics, Machine Learning  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20120619 15:40 
randomForest  randomForest provides an R interface to the classification and regression algorithm proposed by Leo Breiman.  
Tags: classification, machine learning, random forest, regression  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20090914 13:01 
recursive segmentation  Recursive segmentation (rseg) makes use of recursive partitioning methods to build a patient rule induction method (PRIM) like prediction model for exploratory subgroup analysis.  
Tags: machine learning, subgroup discovery  

Activity Percentile: 0 Activity Ranking: 0 Registered: 20160801 12:38 
stablelearner  An R package for assessing the stability of results from statistical learning.  
Tags: Machine Learning, Machine learning, Variables Selection, bootstrapping, machine learning, recursive partioning, resampling methods  
This project has not yet categorized itself in the Trove Software Map  Activity Percentile: 0 Activity Ranking: 0 Registered: 20160417 11:52 