| Detailed description |
For integration with BioUML and other BI applications it would be good if GA could export GWA scan results in UCSC 'bed' format. It will be rather straightforward to do that based on the data present in gwaa.data-class
Format definition:
http://genome.ucsc.edu/FAQ/FAQformat.html#format1
Tagir: Actually it's loosely defined. It's tab separated file describing one
feature per row where first three fields are chromosome (chr1, chrX,
etc.); feature start and feature end coordinates. Subsequent fields
are actually used for any custom annotation, though geneXplain tries
to use information from them according to this document (for example
it reads strand from field#6). |
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