Date:
2011-07-11 11:11 |
Priority:
3 |
State:
Closed |
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Submitted by:
Aaron King (kingaa)
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Assigned to:
Nobody (None)
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Hardware: None |
Operating System: None |
Severity: blocker |
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URL: pomp.r-forge.r-project.org |
Summary:
linking to libgfortran in R-forge build broken |
Detailed description |
pomp cannot be built on R-forge due to failed linking with libgfortran. This appears to be a change in the build system and not in the package codes. Would you please look into it?
R-forge build log file included below
pomp log file (build_src)
Sun Jul 10 23:15:15 2011: Building tarball for package pomp (SVN revision NA)
using R version 2.13.1 RC (2011-07-04 r56273) ...
* checking for file ‘pomp/DESCRIPTION’ ... OK
* preparing ‘pomp’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package ‘pomp’ ...
** libs
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c R_init_pomp.c -o R_init_pomp.o
gfortran -fpic -g -O2 -c SSA.f -o SSA.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c SSA_wrapper.c -o SSA_wrapper.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c blowfly.c -o blowfly.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c bspline.c -o bspline.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c cholmodel.c -o cholmodel.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c dmeasure.c -o dmeasure.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c dprocess.c -o dprocess.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c dsobol.c -o dsobol.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c euler.c -o euler.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c eulermultinom.c -o eulermultinom.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c gompertz.c -o gompertz.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c initstate.c -o initstate.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c lookup_table.c -o lookup_table.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c ou2.c -o ou2.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c pfilter.c -o pfilter.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c pomp_fun.c -o pomp_fun.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c probe.c -o probe.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c probe_acf.c -o probe_acf.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c probe_marginal.c -o probe_marginal.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c probe_nlar.c -o probe_nlar.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c ricker.c -o ricker.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c rmeasure.c -o rmeasure.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c rprocess.c -o rprocess.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c simulate.c -o simulate.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c sir.c -o sir.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c skeleton.c -o skeleton.o
gfortran -fpic -g -O2 -c sobol.f -o sobol.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c synth_lik.c -o synth_lik.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c trajectory.c -o trajectory.o
gcc -std=gnu99 -I/srv/R/R-patched/build.11-07-05/include -I/usr/local/include -fpic -g -O2 -c tsir.c -o tsir.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o pomp.so R_init_pomp.o SSA.o SSA_wrapper.o blowfly.o bspline.o cholmodel.o dmeasure.o dprocess.o dsobol.o euler.o eulermultinom.o gompertz.o initstate.o lookup_table.o ou2.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o ricker.o rmeasure.o rprocess.o simulate.o sir.o skeleton.o sobol.o synth_lik.o trajectory.o tsir.o -L/srv/R/R-patched/build.11-07-05/lib -lRlapack -L/srv/R/R-patched/build.11-07-05/lib -lRblas -lgfortran -lm -lgfortran -lm -L/srv/R/R-patched/build.11-07-05/lib -lR
/usr/bin/ld: cannot find -lgfortran
/usr/bin/ld: cannot find -lgfortran
collect2: ld returned 1 exit status
make: *** [pomp.so] Error 1
ERROR: compilation failed for package ‘pomp’
* removing ‘/tmp/RtmpXuSqkq/Rinst2f74cbf2/pomp’
-----------------------------------
ERROR: package installation failed
Run time: 19.92 seconds.
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