[#6522] Tests Fail/Wont Run

Date:
2017-07-13 12:05 Priority:
3

State:
Open

Submitted by:
Will Kew (popher) Assigned to:
Nobody (None)

Hardware:
None Product:
Software A

Operating System:
None Component:
None

Version:
None Severity:
critical

Resolution:
None

URL:

Summary:
Tests Fail/Wont Run

Detailed description
Fresh install of BATMAN 1.2.1.10 from source on Windows 7. Attempts to run any of the tests fail. Console is as follows: > library("batman", lib.loc="C:/Program Files/R/R-3.4.1/library") Loading required package: doSNOW Loading required package: foreach Loading required package: iterators Loading required package: snow Loading required package: plotrix > bm<-batman() Running batman... Number of burn-in iterations: 200 Number of post-burn-in iterations: 100 The template file used is 2: The user input template of multiplets in multi_data_user.csv file. Loading multi_data_user.csv... Percentage completed... \| \| 0%Buffer size is adjusted to 120 Size of each spectrum is 682. Size of metabolite list is 6. of which 6 have resonances in/near the specified region and will be fit. Constructing chain data structure... time used is 4 seconds. Running MCMC... \|=================================================================================================== \| 67% time used for burnin is 8 seconds. \|====================================================================================================================================================\| 100% time used is 12 seconds. saving posteriors... time elapsed 16.45 second. Reading in saved data in folder Error in x[j + 2L] != x[j + 3L] : comparison of these types is not implemented > sessionInfo() R version 3.4.1 (2017-06-30) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 Matrix products: default locale: [1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252 [4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] batman_1.2.1.10 plotrix_3.6-5 doSNOW_1.0.14 snow_0.4-2 iterators_1.0.8 foreach_1.4.4 loaded via a namespace (and not attached): [1] compiler_3.4.1 tools_3.4.1 codetools_0.2-15

Comments:

Message
Date: 2017-07-13 12:16 Sender: Will Kew Looks like this is an R > 3.4 related issue. R3.3.3 and 3.3.1 seem to work OK. Could it be related to the following change for 3.4.0 : https://cran.r-project.org/doc/manuals/r-release/NEWS.html Arithmetic, logic (&, \|) and comparison (aka ‘relational’, e.g., <, ==) operations with arrays now behave consistently, notably for arrays of length zero. Arithmetic between length-1 arrays and longer non-arrays had silently dropped the array attributes and recycled. This now gives a warning and will signal an error in the future, as it has always for logic and comparison operations in these cases (e.g., compare matrix(1,1) + 2:3 and matrix(1,1) < 2:3).

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