| Detailed description |
Hey im trying to compile the package for webR / wasm and get the following error:
> rwasm::build('./robustbase_local')
> Will install 1 package.
> Will download 2 packages with unknown size.
+ DEoptimR 1.1-3 [dl]
i Getting 1 pkg with unknown size
v Got DEoptimR 1.1-3 (x86_64-pc-linux-gnu-ubuntu-22.04) (72.16 kB)
v Downloaded 1 package (72.16 kB) in 2.5s
v Installed DEoptimR 1.1-3 (25ms)
v 1 dep: added 1, dld 1 (72.16 kB) [3.4s]
* installing *source* package 'robustbase' ...
** using non-staged installation
** libs
using C compiler: 'emcc (Emscripten gcc/clang-like replacement + linker emulating GNU ld) 3.1.47 (431685f05c67f0424c11473cc16798b9587bb536)'
using Fortran compiler: 'flang-new version 17.0.6 (https://github.com/r-wasm/llvm-project 49f8a443424a6111bc055f349c9bfad0aa619c22)'
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c R-rng4ftn.c -o R-rng4ftn.o
/opt/flang/host/bin/flang-new -fPIC -O2 -c eigen.f -o eigen.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c init.c -o init.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c lmrob.c -o lmrob.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c mc.c -o mc.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c monitor.c -o monitor.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c qn_sn.c -o qn_sn.o
/opt/flang/host/bin/flang-new -fPIC -O2 -c rf-common.f -o rf-common.o
/opt/flang/host/bin/flang-new -fPIC -O2 -c rffastmcd.f -o rffastmcd.o
/opt/flang/host/bin/flang-new -fPIC -O2 -c rfltsreg.f -o rfltsreg.o
./rfltsreg.f:252:14: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=28_8) vs CHARACTER(KIND=1,LEN=18_8)
+ call intpr(' rftls.... minigr=',-1,[minigr],1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:136:10: previous reference to 'intpr'
call intpr('Entering rfltsreg() - krep: ',-1, i_aux, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:337:11: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=28_8) vs CHARACTER(KIND=1,LEN=31_8)
+ call intpr(' rftls.... initialization ready',-1,[0],1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:136:10: previous reference to 'intpr'
call intpr('Entering rfltsreg() - krep: ',-1, i_aux, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:417:10: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=28_8) vs CHARACTER(KIND=1,LEN=43_8)
call intpr('Main (number of trials nrep, kstep, nhalf):',
^
./rfltsreg.f:136:10: previous reference to 'intpr'
call intpr('Entering rfltsreg() - krep: ',-1, i_aux, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:446:15: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=28_8) vs CHARACTER(KIND=1,LEN=31_8)
+ call intpr(' rftls.... looping by group ii=',-1,[ii],1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:136:10: previous reference to 'intpr'
call intpr('Entering rfltsreg() - krep: ',-1, i_aux, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:471:17: warning: Reference to the procedure 'intpr' has an implicit interface that is distinct from another reference: incompatible dummy argument #1: incompatible dummy data object types: CHARACTER(KIND=1,LEN=28_8) vs CHARACTER(KIND=1,LEN=30_8)
+ call intpr(' rftls.... for(i = 1,nrep): i=',-1,[i],1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
./rfltsreg.f:136:10: previous reference to 'intpr'
call intpr('Entering rfltsreg() - krep: ',-1, i_aux, 1)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/opt/flang/host/bin/flang-new -fPIC -O2 -c rllarsbi.f -o rllarsbi.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c rob-utils.c -o rob-utils.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c rowMedians.c -o rowMedians.o
emcc -DNDEBUG -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.3.3/build/include -I/opt/webr/R/build/R-4.3.3/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -std=gnu11 -c wgt_himed.c -o wgt_himed.o
emcc -s SIDE_MODULE=1 -s WASM_BIGINT -s ASSERTIONS=1 -L/opt/webr/wasm/lib -L/opt/webr/wasm/R-4.3.3/lib/R/lib -s USE_BZIP2=1 -s USE_ZLIB=1 -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -Oz -o robustbase.so R-rng4ftn.o eigen.o init.o lmrob.o mc.o monitor.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o rllarsbi.o rob-utils.o rowMedians.o wgt_himed.o -L/lib/R/lib -lRlapack -L/lib/R/lib -lRblas /opt/flang/wasm/lib/libFortranRuntime.a
wasm-ld: error: function signature mismatch: realloc
>>> defined as (i32, i64) -> i32 in rfltsreg.o
>>> defined as (i32, i32) -> i32 in /opt/flang/wasm/lib/libFortranRuntime.a(array-constructor.o)
emcc: error: '/opt/emsdk/upstream/bin/wasm-ld -o robustbase.so --whole-archive -L/opt/webr/wasm/lib -L/opt/webr/wasm/R-4.3.3/lib/R/lib R-rng4ftn.o eigen.o init.o lmrob.o mc.o monitor.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o rllarsbi.o rob-utils.o rowMedians.o wgt_himed.o -L/lib/R/lib /opt/webr/wasm/R-4.3.3/lib/R/lib/libRlapack.so -L/lib/R/lib /opt/webr/wasm/R-4.3.3/lib/R/lib/libRblas.so /opt/flang/wasm/lib/libFortranRuntime.a -L/opt/emsdk/upstream/emscripten/cache/sysroot/lib/wasm32-emscripten/pic --no-whole-archive -mllvm -combiner-global-alias-analysis=false -mllvm -wasm-enable-sjlj -mllvm -disable-lsr -mllvm -wasm-enable-eh -mllvm -exception-model=wasm --import-memory --strip-debug --export-dynamic --export-if-defined=main --export-if-defined=__get_exception_message --export-if-defined=free --export-if-defined=__cpp_exception --export-if-defined=__cxa_increment_exception_refcount --export-if-defined=__cxa_decrement_exception_refcount --export-if-defined=__thrown_object_from_unwind_exception --export-if-defined=__start_em_asm --export-if-defined=__stop_em_asm --export-if-defined=__start_em_lib_deps --export-if-defined=__stop_em_lib_deps --export-if-defined=__start_em_js --export-if-defined=__stop_em_js --export-if-defined=__main_argc_argv --export-if-defined=__wasm_apply_data_relocs --export-if-defined=fflush --export=__wasm_call_ctors --experimental-pic -shared' failed (returned 1)
make: *** [/opt/R/4.3.2/lib/R/share/make/shlib.mk:10: robustbase.so] Error 1
ERROR: compilation failed for package 'robustbase'
* removing '/tmp/RtmpFy5BE1/file141acad65/robustbase'
Error in wasm_build(pkg, tarball_path, out_dir) :
Building wasm binary for package 'robustbase' failed.
This issue seems to be the same as here: https://github.com/vegandevs/vegan/issues/623
meaning issues with Fortran dynamic memory allocation |
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