R Development Page
Contributed R Packages
Below is a list of all packages provided by project Patchwork.
Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).
Packages
| TAPS | Tumor Abberation Prediction Suite | |||||||||
| Performs a allele-specific copy number analysis of array data. | ||||||||||
| Version: 2.0 | Last change: 2015-11-23 10:54:36+01 | Rev.: 219 | ||||||||||
Download:
 (.tar.gz) |
 (.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("TAPS", repos="http://R-Forge.R-project.org") | ||||||||||
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| patchwork | Allele-specific Copy Number Analysis of whole genome data | |||||||||
| Performs a allele-specific copy number analysis of whole genome data. | ||||||||||
| Version: 2.4 | Last change: 2017-02-03 13:39:12+01 | Rev.: 220 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | Stable Release: Get patchwork 1.2.0 from CRAN | ||||||||||
R install command:
install.packages("patchwork", repos="http://R-Forge.R-project.org") | ||||||||||
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| patchworkCG | Allele-specific Copy Number Analysis of CompleteGenomics Whole Genome data | |||||||||
| Visualizes CompleteGenomics Whole genome data | ||||||||||
| Version: 2.0 | Last change: 2013-06-05 14:18:30+02 | Rev.: 171 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("patchworkCG", repos="http://R-Forge.R-project.org") | ||||||||||
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| patchworkData | Data for patchwork package. | |||||||||
| Supplementary data package for patchwork. (Note: Not necessary for patchworkCG) | ||||||||||
| Version: 2.0 | Last change: 2012-07-10 10:38:08+02 | Rev.: 146 | ||||||||||
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Download:
(.tar.gz) |
(.zip) |
Build status: Current | ||||||||||
R install command:
install.packages("patchworkData", repos="http://R-Forge.R-project.org") | ||||||||||
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Build status codes
0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).
If your package is not shown on this page or not building, then check the build system status report.
