SCM

R Development Page

Contributed R Packages

Below is a list of all packages provided by project Tools for Whole-Genome Prediction.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

BGLR

Bayesian Generalized Linear Regression

  Bayesian Generalized Linear Regression.
  Version: 1.0.4 | Last change: 2015-04-07 01:38:09+02 | Rev.: 97
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get BGLR 1.1.2 from CRAN
  R install command: install.packages("BGLR", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


BGLR.ff

Bayesian Generalized Linear Regression

  Bayesian Generalized Linear Regression
  Version: 1.0.4 | Last change: 2015-02-27 19:34:27+01 | Rev.: 95
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("BGLR.ff", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


BGLRutils

Utilities for Bayesian Generalized Linear Regression

  Utilities for Bayesian Generalized Linear Regression
  Version: 0.1 | Last change: 2013-09-03 22:19:15+02 | Rev.: 62
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current
  R install command: install.packages("BGLRutils", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


BLR

Bayesian Linear Regression

  Bayesian Linear Regression
  Version: 1.3 | Last change: 2012-12-11 17:58:31+01 | Rev.: 9
  Download: linux(.tar.gz) | windows(.zip) | Build status: Current | Stable Release: Get BLR 1.6 from CRAN
  R install command: install.packages("BLR", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)


bigPSD

Computation of genomic relationship matrixes and genomic distances. This version uses a subset of functions originally found in the package RScaLAPACK (0.6.1).

  An R add-on package capable of computing genomic relationship matrixes and genomic distances. This version uses a subset of functions originally found in the package RScaLAPACK (0.6.1), which uses the high-performance ScaLAPACK library for the linear algebra computations. The RScaLAPACK package was written by Nagiza F. Samatova , Srikanth Yoginath , David Bauer and Guruprasad Kora
  Version: 1.0 | Last change: 2013-05-17 15:41:15+02 | Rev.: 43
  Download: linux(.tar.gz) | windows(.zip) | Build status: Failed to build
  R install command: install.packages("bigPSD", repos="http://R-Forge.R-project.org")
 
Logs:  
Package build: Source package (Linux x86_64) Windows binary (x86_64/i386)
Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

0 - Current: the package is available for download. The corresponding package passed checks on the Linux and Windows platform without ERRORs.
1 - Scheduled for build: the package has been recognized by the build system and provided in the staging area.
2 - Building: the package has been sent to the build machines. It will be built and checked using the latest patched version of R. Note that it is included in a batch of several packages. Thus, this process will take some time to finish.
3 - Failed to build: the package failed to build or did not pass the checks on the Linux and/or Windows platform. It is not made available since it does not meet the policies.
4 - Conflicts: two or more packages of the same name exist. None of them will be built. Maintainers are asked to negotiate further actions.
5 - Offline: the package is not available. The build system may be offline or the package maintainer did not trigger a rebuild (done e.g., via committing to the package repository).

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