R Development Page

Contributed R Packages

Below is a list of all packages provided by project dnet.

Important note for package binaries: R-Forge provides these binaries only for the most recent version of R, but not for older versions. In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R or, alternatively, install from the package sources (.tar.gz).

Packages

dnet	Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
	The focus of the dnet by Fang and Gough (2014) is to make sense of omics data (such as gene expression and mutations) from different angles including: integration with molecular networks, enrichments using ontologies, and relevance to gene evolutionary ages. Integration is achieved to identify a gene subnetwork from the whole gene network whose nodes/genes are labelled with informative data (such as the significant levels of differential expression or survival risks). To help make sense of identified gene networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including: human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for calculating semantic similarity between ontology terms (and between genes) and for calculating network affinity based on random walk; both can be done via high-performance parallel computing.
	Version: 1.1.7 | Last change: 2020-02-20 10:55:18+01 | Rev.: 205
	Download: (.tar.gz) | (.zip) | Build status: Current | Stable Release: Get dnet 1.1.7 from CRAN
	R install command: install.packages("dnet", repos="http://R-Forge.R-project.org")
	Logs:   Package build: Source package (Linux x86_64) Windows binary (x86_64/i386) Package check: Linux x86_64 (patched) | Linux x86_64 (devel) Windows (patched) | Windows (devel)

 

Build status codes

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